Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   B1NLA3E_RS16390 Genome accession   NC_021171
Coordinates   3425884..3426324 (-) Length   146 a.a.
NCBI ID   WP_041581162.1    Uniprot ID   -
Organism   Bacillus sp. 1NLA3E     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3420884..3431324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS16375 (B1NLA3E_15770) - 3421798..3422364 (+) 567 WP_041580617.1 recombinase family protein -
  B1NLA3E_RS23345 (B1NLA3E_15775) - 3422740..3424794 (+) 2055 WP_015594953.1 VapE domain-containing protein -
  B1NLA3E_RS16385 (B1NLA3E_15780) - 3425158..3425508 (+) 351 WP_015594954.1 hypothetical protein -
  B1NLA3E_RS16390 comGA 3425884..3426324 (-) 441 WP_041581162.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  B1NLA3E_RS16400 (B1NLA3E_15785) - 3426995..3427696 (+) 702 WP_015594955.1 helix-turn-helix domain-containing protein -
  B1NLA3E_RS16405 (B1NLA3E_15790) - 3427787..3428029 (+) 243 WP_015594956.1 DUF2626 domain-containing protein -
  B1NLA3E_RS16410 (B1NLA3E_15795) - 3428072..3429172 (-) 1101 WP_015594957.1 SAM-dependent methyltransferase -
  B1NLA3E_RS16415 (B1NLA3E_15800) - 3429325..3429960 (-) 636 WP_015594958.1 MBL fold metallo-hydrolase -
  B1NLA3E_RS16420 tnpB 3430148..3431322 (-) 1175 Protein_3266 IS200/IS605 family element RNA-guided endonuclease TnpB -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16572.27 Da        Isoelectric Point: 10.7465

>NTDB_id=58401 B1NLA3E_RS16390 WP_041581162.1 3425884..3426324(-) (comGA) [Bacillus sp. 1NLA3E]
MSSIEQLAERVITDAVRNNATDIHFLPRKNDTLVQLRIGNNLIPKFSLPKQECDRLISHFKFTSSMDIGERRRPQSGSFS
LEVDQHVIGLRLSTLPASNSESLVIRLLPQQQQIPFFQLSLFPIMTRKLIALLKHSHGLIIFTGPT

Nucleotide


Download         Length: 441 bp        

>NTDB_id=58401 B1NLA3E_RS16390 WP_041581162.1 3425884..3426324(-) (comGA) [Bacillus sp. 1NLA3E]
GTGAGCTCGATCGAGCAATTAGCCGAAAGAGTTATTACCGACGCAGTTCGAAACAACGCAACCGACATCCACTTCCTTCC
TCGAAAAAATGACACCTTAGTACAACTACGAATCGGAAACAATTTGATCCCAAAATTTTCTCTTCCCAAACAAGAATGTG
ATCGACTGATTTCCCACTTTAAGTTTACATCCTCAATGGACATTGGGGAGCGAAGGCGACCTCAAAGTGGTTCGTTTTCT
CTCGAGGTGGATCAACATGTCATTGGCCTCCGCTTATCAACATTGCCAGCCAGCAATAGTGAAAGCTTAGTGATTCGCTT
ACTTCCACAGCAACAACAAATTCCTTTTTTTCAACTTTCTTTATTCCCTATTATGACTAGAAAACTGATTGCCCTCCTTA
AGCATTCTCATGGATTAATCATTTTTACTGGACCGACATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5
  pilB Glaesserella parasuis strain SC1401

37.762

97.945

0.37

Multiple sequence alignment