Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   B1NLA3E_RS15225 Genome accession   NC_021171
Coordinates   3196651..3197265 (+) Length   204 a.a.
NCBI ID   WP_015594722.1    Uniprot ID   -
Organism   Bacillus sp. 1NLA3E     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3191651..3202265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS15200 (B1NLA3E_14595) - 3192081..3192944 (-) 864 WP_015594717.1 ABC transporter permease subunit -
  B1NLA3E_RS23340 (B1NLA3E_14600) - 3193098..3193658 (-) 561 WP_015594718.1 YppG family protein -
  B1NLA3E_RS15210 (B1NLA3E_14605) - 3193869..3194081 (+) 213 WP_015594719.1 YppF family protein -
  B1NLA3E_RS15215 (B1NLA3E_14610) - 3194759..3195049 (-) 291 WP_015594720.1 hypothetical protein -
  B1NLA3E_RS15220 (B1NLA3E_14615) - 3195535..3196527 (-) 993 WP_236619581.1 DUF2515 domain-containing protein -
  B1NLA3E_RS15225 (B1NLA3E_14620) recU 3196651..3197265 (+) 615 WP_015594722.1 Holliday junction resolvase RecU Machinery gene
  B1NLA3E_RS15230 (B1NLA3E_14625) - 3197300..3199873 (+) 2574 WP_015594723.1 penicillin-binding protein 1A -
  B1NLA3E_RS15235 (B1NLA3E_14630) - 3199926..3200435 (-) 510 WP_015594724.1 hypothetical protein -
  B1NLA3E_RS15240 (B1NLA3E_14635) nth 3200432..3201088 (-) 657 WP_041580587.1 endonuclease III -
  B1NLA3E_RS15245 (B1NLA3E_14640) - 3201152..3201844 (-) 693 WP_015594726.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 24203.50 Da        Isoelectric Point: 9.3283

>NTDB_id=58397 B1NLA3E_RS15225 WP_015594722.1 3196651..3197265(+) (recU) [Bacillus sp. 1NLA3E]
MIFNYPNGRRFTQTSEKQETFRKKEKNFTYSNRGMTLEEDLNETNRFYLENNIAVIHKKPTPVQIVQVDYPKRSAAVIKE
AYFKQASTTDYNGIYRGRYIDFEAKETKFESSFPLKNFHEHQINHMKAVLAHDGICFVIIRFSSFEKVFFLPAEHLLIYW
KRMSDGGRKSITFEEINDNSHALSLGFRPRIDYIKVIDDLYSFH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=58397 B1NLA3E_RS15225 WP_015594722.1 3196651..3197265(+) (recU) [Bacillus sp. 1NLA3E]
ATGATTTTTAATTATCCGAACGGAAGACGCTTTACTCAGACATCTGAAAAACAGGAAACCTTCCGTAAAAAAGAAAAAAA
TTTCACCTACAGTAATCGTGGGATGACATTAGAGGAAGATTTGAACGAAACAAATCGTTTTTACTTAGAAAATAACATTG
CAGTCATCCATAAAAAACCAACACCCGTACAAATCGTTCAAGTTGATTATCCAAAAAGAAGTGCGGCAGTAATTAAGGAG
GCCTACTTTAAACAAGCATCAACAACAGATTATAATGGAATTTATAGAGGAAGATATATTGACTTTGAAGCAAAGGAAAC
TAAATTCGAATCTTCTTTTCCATTAAAAAATTTCCATGAACACCAAATAAACCATATGAAAGCAGTCTTGGCTCATGATG
GGATTTGTTTTGTCATTATCCGTTTTTCCAGCTTTGAGAAAGTTTTTTTCCTCCCAGCAGAGCACTTACTAATATATTGG
AAACGTATGTCAGATGGTGGAAGAAAATCAATCACATTCGAAGAAATAAACGATAACAGTCATGCCCTTTCGCTTGGTTT
TCGACCGAGGATTGACTATATTAAAGTAATCGATGATCTTTATAGTTTTCATTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(33-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

98.039

0.618

Multiple sequence alignment