Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MW400_RS15750 Genome accession   NZ_CP095533
Coordinates   3350706..3352133 (+) Length   475 a.a.
NCBI ID   WP_000980560.1    Uniprot ID   -
Organism   Escherichia coli strain GN02461     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3345706..3357133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW400_RS15710 (MW400_15705) yeeW 3345890..3346084 (+) 195 WP_000988600.1 DUF5983 family protein -
  MW400_RS15715 (MW400_15710) - 3346118..3346210 (+) 93 Protein_3078 DUF957 domain-containing protein -
  MW400_RS15720 (MW400_15715) - 3346499..3346636 (-) 138 Protein_3079 transposase domain-containing protein -
  MW400_RS15725 (MW400_15720) - 3346699..3346881 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  MW400_RS15730 (MW400_15725) tmaR 3346982..3347311 (-) 330 WP_000450409.1 DUF496 family protein -
  MW400_RS15735 (MW400_15730) yeeA 3347483..3348541 (-) 1059 WP_001200888.1 FUSC family protein -
  MW400_RS15740 (MW400_15735) sbmC 3348739..3349212 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  MW400_RS15745 (MW400_15740) dacD 3349331..3350497 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MW400_RS15750 (MW400_15745) sbcB 3350706..3352133 (+) 1428 WP_000980560.1 exodeoxyribonuclease I Machinery gene
  MW400_RS15755 (MW400_15750) tsuB 3352176..3352403 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MW400_RS15760 (MW400_15755) tsuA 3352417..3353475 (-) 1059 WP_000492349.1 thiosulfate utilization transporter TsuA/YeeE -
  MW400_RS15765 (MW400_15760) plaP 3353654..3355012 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MW400_RS15770 (MW400_15765) yoeI 3355002..3355064 (-) 63 WP_010723108.1 membrane protein YoeI -
  MW400_RS15775 (MW400_15770) yeeY 3355279..3356208 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  MW400_RS15780 (MW400_15775) yeeZ 3356254..3357078 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54392.67 Da        Isoelectric Point: 5.3498

>NTDB_id=583852 MW400_RS15750 WP_000980560.1 3350706..3352133(+) (sbcB) [Escherichia coli strain GN02461]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
ERLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=583852 MW400_RS15750 WP_000980560.1 3350706..3352133(+) (sbcB) [Escherichia coli strain GN02461]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCACCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGACGCT
GAGCGTTTAGGGATTGCTCGTCAACACTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGT
TGTGGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCG
ACGCCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGAT
AAGCGTATCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCTGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583