Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MW400_RS07090 Genome accession   NZ_CP095533
Coordinates   1554383..1554988 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain GN02461     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1549383..1559988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW400_RS07060 (MW400_07055) rsmS 1550085..1550249 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  MW400_RS07065 (MW400_07060) priC 1550263..1550790 (-) 528 WP_000844858.1 primosomal replication protein N'' -
  MW400_RS07070 (MW400_07065) ybaN 1550860..1551237 (+) 378 WP_001188906.1 DUF454 family protein -
  MW400_RS07075 (MW400_07070) apt 1551390..1551941 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  MW400_RS07080 (MW400_07075) dnaX 1552070..1554001 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  MW400_RS07085 (MW400_07080) ybaB 1554054..1554383 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  MW400_RS07090 (MW400_07085) recR 1554383..1554988 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  MW400_RS07095 (MW400_07090) htpG 1555098..1556972 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  MW400_RS07100 (MW400_07095) adk 1557153..1557797 (+) 645 WP_001220233.1 adenylate kinase -
  MW400_RS07105 (MW400_07100) hemH 1557929..1558891 (+) 963 WP_001250117.1 ferrochelatase -
  MW400_RS07110 (MW400_07105) aes 1558888..1559847 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=583832 MW400_RS07090 WP_001195025.1 1554383..1554988(+) (recR) [Escherichia coli strain GN02461]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=583832 MW400_RS07090 WP_001195025.1 1554383..1554988(+) (recR) [Escherichia coli strain GN02461]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTACTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443