Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   B1NLA3E_RS02585 Genome accession   NC_021171
Coordinates   504331..504654 (-) Length   107 a.a.
NCBI ID   WP_015592308.1    Uniprot ID   N0ANC3
Organism   Bacillus sp. 1NLA3E     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 499331..509654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS02575 (B1NLA3E_02275) - 499522..500805 (-) 1284 WP_015592304.1 MFS transporter -
  B1NLA3E_RS02580 (B1NLA3E_02280) - 500848..502941 (-) 2094 WP_015592305.1 DNA topoisomerase III -
  B1NLA3E_RS25145 (B1NLA3E_02285) - 503151..503315 (-) 165 WP_187292145.1 hypothetical protein -
  B1NLA3E_RS23500 (B1NLA3E_02290) - 504079..504207 (+) 129 WP_015592307.1 anti-repressor SinI family protein -
  B1NLA3E_RS02585 (B1NLA3E_02295) sinR 504331..504654 (-) 324 WP_015592308.1 helix-turn-helix domain-containing protein Regulator
  B1NLA3E_RS02590 (B1NLA3E_02300) map 504883..505638 (+) 756 WP_015592309.1 type I methionyl aminopeptidase -
  B1NLA3E_RS02595 (B1NLA3E_02305) - 505770..505994 (-) 225 WP_015592310.1 DUF1128 domain-containing protein -
  B1NLA3E_RS02600 (B1NLA3E_02310) - 506158..506523 (+) 366 WP_015592311.1 YtxH domain-containing protein -
  B1NLA3E_RS02605 (B1NLA3E_02315) - 506563..507384 (+) 822 WP_041580859.1 YihY/virulence factor BrkB family protein -
  B1NLA3E_RS25150 - 507715..508302 (-) 588 WP_187292146.1 hypothetical protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12307.12 Da        Isoelectric Point: 6.3806

>NTDB_id=58383 B1NLA3E_RS02585 WP_015592308.1 504331..504654(-) (sinR) [Bacillus sp. 1NLA3E]
MIGERVKKLRQEKKMSLTELADQAGVAKSYISSLERNLQSNPSIQFLEKIGTVLGVPIDYFILNNPDSEKLDPGWISLVK
DAMESGITKDQFREYLEFNKWKINQDK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=58383 B1NLA3E_RS02585 WP_015592308.1 504331..504654(-) (sinR) [Bacillus sp. 1NLA3E]
ATGATCGGTGAACGCGTAAAAAAGCTTCGTCAGGAAAAAAAAATGTCCTTAACTGAGCTTGCTGACCAAGCTGGAGTTGC
AAAATCTTATATAAGTTCTTTAGAGCGTAATTTACAATCCAATCCTTCTATACAATTCCTAGAAAAAATTGGGACTGTTT
TAGGGGTTCCAATTGATTATTTTATATTAAACAATCCCGACTCTGAAAAGCTTGACCCAGGTTGGATCAGTTTAGTCAAA
GACGCGATGGAGTCTGGTATAACAAAAGATCAATTTCGTGAGTACCTTGAATTTAATAAATGGAAGATTAATCAAGATAA
GTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)

Anti-repressor SinI (SinI)

(71-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N0ANC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

54.63

100

0.551

Multiple sequence alignment