Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B1NLA3E_RS00225 Genome accession   NC_021171
Coordinates   45127..45417 (-) Length   96 a.a.
NCBI ID   WP_187292175.1    Uniprot ID   -
Organism   Bacillus sp. 1NLA3E     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40127..50417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS00190 (B1NLA3E_00135) - 40498..40827 (+) 330 WP_015591878.1 cyclic-di-AMP receptor -
  B1NLA3E_RS00195 (B1NLA3E_00140) holB 40934..41941 (+) 1008 WP_015591879.1 DNA polymerase III subunit delta' -
  B1NLA3E_RS00200 (B1NLA3E_00145) - 41934..42761 (+) 828 WP_015591880.1 stage 0 sporulation family protein -
  B1NLA3E_RS00205 (B1NLA3E_00150) yabA 42775..43152 (+) 378 WP_015591881.1 DNA replication initiation control protein YabA -
  B1NLA3E_RS00210 (B1NLA3E_00155) - 43209..43949 (+) 741 WP_015591882.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  B1NLA3E_RS00215 (B1NLA3E_00160) - 43939..44223 (+) 285 WP_015591883.1 GIY-YIG nuclease family protein -
  B1NLA3E_RS00220 (B1NLA3E_00165) rsmI 44201..45076 (+) 876 WP_015591884.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B1NLA3E_RS00225 (B1NLA3E_00170) abrB 45127..45417 (-) 291 WP_187292175.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  B1NLA3E_RS00230 (B1NLA3E_00175) metG 45975..47936 (+) 1962 WP_015591886.1 methionine--tRNA ligase -
  B1NLA3E_RS00235 (B1NLA3E_00180) - 48102..48872 (+) 771 WP_015591887.1 YchF/TatD family DNA exonuclease -
  B1NLA3E_RS00240 (B1NLA3E_00185) - 49106..50281 (+) 1176 WP_015591888.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10808.61 Da        Isoelectric Point: 4.9436

>NTDB_id=58379 B1NLA3E_RS00225 WP_187292175.1 45127..45417(-) (abrB) [Bacillus sp. 1NLA3E]
MGMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDERIILKKYKPNMTCQVTGEVSDDNVTLADGKLILSREG
AELLVEEIKKAFEFNK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=58379 B1NLA3E_RS00225 WP_187292175.1 45127..45417(-) (abrB) [Bacillus sp. 1NLA3E]
ATTGGAATGAAATCTACAGGTATTGTTCGTAAAGTTGATGAGCTTGGTCGCGTGGTTATTCCTATTGAATTAAGACGTAC
TCTTGGTATTGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGACGAGCGCATCATCTTAAAAAAATACAAGCCAAACA
TGACTTGCCAAGTAACTGGTGAAGTATCTGATGACAATGTGACATTAGCCGACGGCAAATTAATCCTTAGTCGCGAAGGT
GCAGAATTACTAGTAGAAGAAATCAAAAAAGCGTTTGAATTTAACAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

82.796

96.875

0.802

Multiple sequence alignment