Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   B1NLA3E_RS00020 Genome accession   NC_021171
Coordinates   3786..4904 (+) Length   372 a.a.
NCBI ID   WP_015591855.1    Uniprot ID   -
Organism   Bacillus sp. 1NLA3E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS00005 (B1NLA3E_00005) dnaA 571..1917 (+) 1347 WP_015591852.1 chromosomal replication initiator protein DnaA -
  B1NLA3E_RS00010 (B1NLA3E_00010) dnaN 2206..3342 (+) 1137 WP_015591853.1 DNA polymerase III subunit beta -
  B1NLA3E_RS00015 (B1NLA3E_00015) yaaA 3555..3767 (+) 213 WP_144061409.1 S4 domain-containing protein YaaA -
  B1NLA3E_RS00020 (B1NLA3E_00020) recF 3786..4904 (+) 1119 WP_015591855.1 DNA replication/repair protein RecF Machinery gene
  B1NLA3E_RS00025 (B1NLA3E_00025) - 4914..5159 (+) 246 WP_015591856.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  B1NLA3E_RS00030 (B1NLA3E_00030) gyrB 5234..7156 (+) 1923 WP_015591857.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43067.80 Da        Isoelectric Point: 9.0075

>NTDB_id=58377 B1NLA3E_RS00020 WP_015591855.1 3786..4904(+) (recF) [Bacillus sp. 1NLA3E]
MYIQQLQLKNYRNYEVLEAQFENKVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKELISWDKEYAKIEGRVKKQHGS
LPLQLIISKKGKKAKCNHIEQQKLSQYIGNMNVVMFAPEDLNLVKGSPQVRRRFIDMEIGQVSPIYLHDMGQYQKVLQQR
NHYLKLLQTKKQTDLTMLDVLTEQFIQLAAKIIVKRFEFIQLLEKWAVPIHKGISRGLETLKLEYKPSVEVSEERCLSKM
IEVFEQKYFKVKNKEIERGITLFGPHRDDLLFFVNERDVQTFGSQGQQRTTALSVKLAEIELIRSEIGEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVEGIDHQTLKEAATFSVEVGKMSQIQ

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=58377 B1NLA3E_RS00020 WP_015591855.1 3786..4904(+) (recF) [Bacillus sp. 1NLA3E]
ATGTATATCCAGCAATTACAGCTAAAAAACTACCGGAATTATGAGGTTCTTGAGGCTCAATTTGAAAATAAAGTAAATGT
TATCCTAGGTGAAAATGCTCAAGGAAAAACGAATGTAATGGAATCCATTTATGTTCTTGCGATGGCTAAATCCCATCGAA
CTTCAAATGATAAAGAACTTATATCTTGGGACAAAGAATATGCTAAAATAGAAGGTAGGGTTAAAAAACAGCATGGTTCT
TTACCACTACAATTAATTATTTCAAAAAAGGGAAAAAAGGCTAAATGCAATCATATTGAGCAGCAAAAGCTGAGTCAATA
TATTGGAAATATGAATGTTGTCATGTTTGCGCCAGAAGATCTCAATCTTGTAAAAGGGAGCCCTCAAGTTAGGCGTCGTT
TTATTGATATGGAGATTGGGCAAGTATCCCCTATTTATTTACACGATATGGGACAGTACCAGAAAGTATTACAACAAAGA
AATCATTATTTAAAACTACTTCAAACAAAAAAACAAACTGATTTGACCATGCTTGATGTACTTACGGAACAATTTATTCA
ACTCGCAGCAAAAATTATCGTAAAGCGATTTGAATTCATTCAATTATTGGAAAAATGGGCTGTTCCGATCCATAAGGGGA
TTTCCAGAGGTTTAGAAACACTAAAGTTGGAATATAAACCTTCCGTAGAGGTATCAGAAGAAAGATGTTTGTCGAAAATG
ATAGAAGTATTCGAACAAAAATATTTCAAAGTTAAAAATAAGGAAATTGAGCGCGGTATTACTTTGTTTGGTCCCCATCG
TGATGATCTCCTCTTTTTTGTAAATGAACGCGATGTCCAAACGTTCGGGTCACAAGGACAACAAAGAACAACAGCCCTCT
CTGTTAAGCTTGCCGAAATTGAATTAATTCGTTCAGAAATCGGTGAATACCCTATTTTATTGTTAGATGATGTATTATCC
GAGCTTGATGACTACCGTCAATCTCATTTACTTAATACGATTCAAGGCAAGGTTCAAACGTTTGTAACCACCACAAGTGT
GGAAGGAATTGACCATCAAACACTAAAAGAAGCTGCTACATTCAGTGTTGAGGTTGGAAAAATGAGTCAAATTCAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

72.826

98.925

0.72

Multiple sequence alignment