Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   MW397_RS00335 Genome accession   NZ_CP095529
Coordinates   64381..66210 (+) Length   609 a.a.
NCBI ID   WP_029305510.1    Uniprot ID   -
Organism   Escherichia coli strain GN06156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59381..71210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW397_RS00300 (MW397_00300) ysgD 59735..59791 (+) 57 WP_211180520.1 protein YsgD -
  MW397_RS00305 (MW397_00305) corA 59943..60893 (+) 951 WP_000947159.1 magnesium/cobalt transporter CorA -
  MW397_RS00310 (MW397_00310) yigF 60936..61316 (-) 381 WP_000032585.1 DUF2628 domain-containing protein -
  MW397_RS00315 (MW397_00315) yigG 61330..61710 (-) 381 WP_001309870.1 protein YigG -
  MW397_RS00320 (MW397_00320) rarD 61805..62695 (-) 891 WP_000339094.1 EamA family transporter RarD -
  MW397_RS00325 (MW397_00325) yigI 62747..63214 (-) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  MW397_RS00330 (MW397_00330) pldA 63379..64248 (+) 870 WP_001259694.1 phospholipase A -
  MW397_RS00335 (MW397_00335) recQ 64381..66210 (+) 1830 WP_029305510.1 ATP-dependent DNA helicase RecQ Machinery gene
  MW397_RS00340 (MW397_00340) rhtC 66274..66894 (+) 621 WP_000928828.1 threonine export protein RhtC -
  MW397_RS00345 (MW397_00345) rhtB 66956..67576 (-) 621 WP_000171710.1 homoserine/homoserine lactone efflux protein -
  MW397_RS00350 (MW397_00350) pldB 67687..68709 (+) 1023 WP_000487648.1 lysophospholipase L2 -
  MW397_RS00355 (MW397_00355) yigL 68717..69517 (+) 801 WP_000285353.1 sugar/pyridoxal phosphate phosphatase YigL -
  MW397_RS00360 (MW397_00360) bioP 69593..70492 (+) 900 WP_001196244.1 biotin transporter -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68350.46 Da        Isoelectric Point: 7.0905

>NTDB_id=583722 MW397_RS00335 WP_029305510.1 64381..66210(+) (recQ) [Escherichia coli strain GN06156]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLDVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=583722 MW397_RS00335 WP_029305510.1 64381..66210(+) (recQ) [Escherichia coli strain GN06156]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAAATTATCGACACTGTGCTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACCGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTTTCACCGCTGATTTCGTTGATGAAAGAT
CAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAACTTGACGT
GATGACAGGCTGTCGCACCGGGCAAATCCGCCTGCTTTATATCGCGCCGGAACGCCTGATGCTGGATAACTTCCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAGGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATACGCTGCCCTCGGTCAGCTGCGTCAGCGTTTTCCGACGCTGCCGTTTATGGCGCTGACTGCCACAGCCGATGACAC
CACGCGGCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATTAGCAGTTTTGACCGCCCGAACATTC
GTTACATGCTGATGGAAAAGTTCAAACCTCTCGATCAGCTGATGCGCTACGTGCAGGAACAACGCGGTAAGTCGGGGATT
ATTTACTGCAACAGCCGGGCGAAAGTAGAAGACACCGCCGCGCGTCTGCAAAGCAAGGGTATTAGCGCAGCGGCTTATCA
TGCCGGGCTTGAAAACGATGTCCGTGCGGACGTGCAGGAGAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAATAAACCAAACGTCCGCTTCGTGGTCCACTTTGATATTCCGCGCAACATTGAATCCTAT
TATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCGGATATGGCGTG
GCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCATAAACTCAATGCGATGGGCGCGT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTGCTGCTGAACTACTTTGGCGAAGGGCGGCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAATACGATGGTTCAACCGATGCTCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGTGGCGCTAATAACCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTTAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCCCGCCCGGTGCTGCGCGGCGAATCCTC
CTTGCAACTTGCCGTGCCACGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCCTTCGGCGGCAACTACGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGCAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCGACCTTGATTGAGATGGCTGAACAGATGCCGATCACCGCCAGCGAAATGCTTAGCGTTAACGGCGTTGGTATGCGCAA
GCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTCGATGGTGACGACGAAGAGTAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

RQC domain (RQC)

(406-514)

DEAD/DEAH box helicase (DEAD)

(28-187)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

HRDC domain (HRDC)

(533-599)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.203

97.209

0.391