Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KU251_RS01465 Genome accession   NZ_CP077840
Coordinates   312561..313202 (+) Length   213 a.a.
NCBI ID   WP_166686246.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-P90     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307561..318202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU251_RS01445 (KU251_01445) - 307608..307940 (+) 333 WP_000169594.1 hypothetical protein -
  KU251_RS01450 (KU251_01450) - 307943..308767 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  KU251_RS01455 (KU251_01455) ponA 308785..311340 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  KU251_RS01460 (KU251_01460) pilM 311503..312561 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KU251_RS01465 (KU251_01465) pilN 312561..313202 (+) 642 WP_166686246.1 PilN domain-containing protein Machinery gene
  KU251_RS01470 (KU251_01470) pilO 313199..313939 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KU251_RS01475 (KU251_01475) pilP 313950..314477 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KU251_RS01480 (KU251_01480) pilQ 314545..316710 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  KU251_RS01485 (KU251_01485) aroK 316722..317291 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24051.41 Da        Isoelectric Point: 5.3968

>NTDB_id=583548 KU251_RS01465 WP_166686246.1 312561..313202(+) (pilN) [Acinetobacter baumannii strain DETAB-P90]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVMVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=583548 KU251_RS01465 WP_166686246.1 312561..313202(+) (pilN) [Acinetobacter baumannii strain DETAB-P90]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAATGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709