Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MW405_RS20130 Genome accession   NZ_CP095518
Coordinates   4245429..4246853 (-) Length   474 a.a.
NCBI ID   WP_000132557.1    Uniprot ID   -
Organism   Escherichia coli strain GN02350     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4240429..4251853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW405_RS20100 (MW405_20100) yeeZ 4240484..4241308 (+) 825 WP_000754734.1 SDR family oxidoreductase -
  MW405_RS20105 (MW405_20105) yeeY 4241354..4242283 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  MW405_RS20110 (MW405_20110) yoeI 4242498..4242560 (+) 63 WP_010723108.1 membrane protein YoeI -
  MW405_RS20115 (MW405_20115) plaP 4242550..4243908 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MW405_RS20120 (MW405_20120) tsuA 4244087..4245145 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  MW405_RS20125 (MW405_20125) tsuB 4245159..4245386 (+) 228 WP_000985267.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MW405_RS20130 (MW405_20130) sbcB 4245429..4246853 (-) 1425 WP_000132557.1 exodeoxyribonuclease I Machinery gene
  MW405_RS20135 (MW405_20135) - 4247035..4248090 (+) 1056 Protein_3947 tyrosine-type recombinase/integrase -
  MW405_RS20140 (MW405_20140) - 4248163..4249283 (+) 1121 WP_085962473.1 IS3-like element ISSen4 family transposase -
  MW405_RS20145 (MW405_20145) - 4249567..4250772 (+) 1206 WP_001535426.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54353.62 Da        Isoelectric Point: 5.3498

>NTDB_id=583547 MW405_RS20130 WP_000132557.1 4245429..4246853(-) (sbcB) [Escherichia coli strain GN02350]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=583547 MW405_RS20130 WP_000132557.1 4245429..4246853(-) (sbcB) [Escherichia coli strain GN02350]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
AGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGATCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584