Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MW405_RS10130 Genome accession   NZ_CP095518
Coordinates   2158928..2159404 (+) Length   158 a.a.
NCBI ID   WP_001537421.1    Uniprot ID   -
Organism   Escherichia coli strain GN02350     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2153928..2164404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW405_RS10100 (MW405_10100) - 2154598..2155482 (+) 885 WP_000010416.1 GTPase family protein -
  MW405_RS10105 (MW405_10105) - 2155685..2156365 (+) 681 WP_059331315.1 helix-turn-helix transcriptional regulator -
  MW405_RS10110 (MW405_10110) - 2156513..2157190 (+) 678 WP_001097301.1 hypothetical protein -
  MW405_RS10115 (MW405_10115) - 2157196..2157429 (+) 234 WP_001278283.1 DUF905 family protein -
  MW405_RS10120 (MW405_10120) - 2157519..2158337 (+) 819 WP_001175162.1 DUF932 domain-containing protein -
  MW405_RS10125 (MW405_10125) - 2158428..2158913 (+) 486 WP_059331371.1 antirestriction protein -
  MW405_RS10130 (MW405_10130) radC 2158928..2159404 (+) 477 WP_001537421.1 JAB domain-containing protein Machinery gene
  MW405_RS10135 (MW405_10135) - 2159467..2159688 (+) 222 WP_000691817.1 DUF987 domain-containing protein -
  MW405_RS10140 (MW405_10140) - 2159750..2160142 (+) 393 Protein_1992 type IV toxin-antitoxin system YeeU family antitoxin -
  MW405_RS10145 (MW405_10145) - 2160189..2160566 (+) 378 WP_001094436.1 TA system toxin CbtA family protein -
  MW405_RS10150 (MW405_10150) - 2160563..2161051 (+) 489 WP_059331310.1 DUF5983 family protein -
  MW405_RS10155 (MW405_10155) - 2161069..2161266 (+) 198 WP_000839243.1 DUF957 domain-containing protein -
  MW405_RS10160 (MW405_10160) - 2161351..2162196 (+) 846 WP_059331312.1 DUF4942 domain-containing protein -
  MW405_RS10165 (MW405_10165) - 2162789..2163286 (+) 498 WP_000509810.1 hypothetical protein -
  MW405_RS10170 (MW405_10170) yicL 2163453..2164376 (+) 924 WP_001445306.1 carboxylate/amino acid/amine transporter -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=583501 MW405_RS10130 WP_001537421.1 2158928..2159404(+) (radC) [Escherichia coli strain GN02350]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=583501 MW405_RS10130 WP_001537421.1 2158928..2159404(+) (radC) [Escherichia coli strain GN02350]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392