Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EP178_RS14775 Genome accession   NZ_AP018377
Coordinates   2106676..2107161 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FC428     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101676..2112161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP178_RS12420 - 2102278..2102789 (-) 512 Protein_2125 pilin -
  EP178_RS14265 - 2103846..2104187 (-) 342 Protein_2126 pilin -
  EP178_RS14770 - 2104227..2104613 (-) 387 Protein_2127 pilin -
  EP178_RS12455 (NgFC428_02165) lpxC 2104755..2105678 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EP178_RS13915 (NgFC428_02166) - 2106162..2106544 (-) 383 Protein_2129 pilin -
  EP178_RS14775 (NgFC428_02167) pilE 2106676..2107161 (-) 486 WP_125121586.1 pilin Machinery gene
  EP178_RS12485 - 2107218..2107565 (-) 348 Protein_2131 pilin -
  EP178_RS14365 - 2107618..2108014 (-) 397 Protein_2132 pilin -
  EP178_RS12500 (NgFC428_02169) - 2108146..2108585 (-) 440 Protein_2133 pilin -
  EP178_RS14960 (NgFC428_02170) - 2109111..2109839 (-) 729 WP_353114220.1 pilin -
  EP178_RS12520 (NgFC428_02171) - 2109862..2110080 (-) 219 Protein_2135 pilin -
  EP178_RS14295 - 2110410..2110601 (+) 192 WP_014580443.1 hypothetical protein -
  EP178_RS12535 (NgFC428_02172) - 2110665..2111354 (-) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  EP178_RS12540 (NgFC428_02173) - 2111351..2112094 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=58350 EP178_RS14775 WP_125121586.1 2106676..2107161(-) (pilE) [Neisseria gonorrhoeae strain FC428]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=58350 EP178_RS14775 WP_125121586.1 2106676..2107161(-) (pilE) [Neisseria gonorrhoeae strain FC428]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453

Multiple sequence alignment