Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   KU217_RS09930 Genome accession   NZ_CP077835
Coordinates   2114927..2115307 (-) Length   126 a.a.
NCBI ID   WP_071210882.1    Uniprot ID   A0A1S2G2L6
Organism   Acinetobacter baumannii strain DETAB-P65     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2109927..2120307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU217_RS09900 (KU217_09895) tadA 2110046..2110549 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  KU217_RS09905 (KU217_09900) - 2110556..2111680 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  KU217_RS09910 (KU217_09905) ung 2111677..2112390 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  KU217_RS09915 (KU217_09910) - 2112441..2113037 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  KU217_RS09920 (KU217_09915) gspK 2113267..2114226 (-) 960 WP_045544206.1 type II secretion system minor pseudopilin GspK -
  KU217_RS09925 (KU217_09920) xcpW 2114226..2114927 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  KU217_RS09930 (KU217_09925) xcpV 2114927..2115307 (-) 381 WP_071210882.1 type II secretion system minor pseudopilin GspI Machinery gene
  KU217_RS09935 (KU217_09930) - 2115297..2115851 (-) 555 WP_000841373.1 type II secretion system protein -
  KU217_RS09940 (KU217_09935) - 2115861..2116469 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  KU217_RS09945 (KU217_09940) - 2116507..2117280 (-) 774 WP_000497298.1 TatD family hydrolase -
  KU217_RS09950 (KU217_09945) - 2117298..2117639 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  KU217_RS09955 (KU217_09950) - 2117651..2118631 (-) 981 WP_045544208.1 DNA polymerase III subunit delta' -
  KU217_RS09960 (KU217_09955) kdsB 2118643..2119404 (-) 762 WP_045544209.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13989.23 Da        Isoelectric Point: 9.8004

>NTDB_id=583473 KU217_RS09930 WP_071210882.1 2114927..2115307(-) (xcpV) [Acinetobacter baumannii strain DETAB-P65]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKLQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=583473 KU217_RS09930 WP_071210882.1 2114927..2115307(-) (xcpV) [Acinetobacter baumannii strain DETAB-P65]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAATTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2G2L6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992