Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EP178_RS12655 Genome accession   NZ_AP018377
Coordinates   2131448..2132416 (-) Length   322 a.a.
NCBI ID   WP_047924479.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FC428     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2126448..2137416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP178_RS12630 - 2126990..2128297 (-) 1308 WP_012504094.1 YadA-like family protein -
  EP178_RS12635 (NgFC428_02193) - 2128283..2128936 (+) 654 WP_012503378.1 IS1595 family transposase -
  EP178_RS12640 (NgFC428_02194) - 2128971..2129729 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  EP178_RS12645 (NgFC428_02195) - 2129813..2130439 (-) 627 WP_003690385.1 FmdE family protein -
  EP178_RS12650 (NgFC428_02196) - 2130484..2131458 (-) 975 WP_003702133.1 iron chelate uptake ABC transporter family permease subunit -
  EP178_RS12655 (NgFC428_02197) ceuB 2131448..2132416 (-) 969 WP_047924479.1 ABC transporter permease Machinery gene
  EP178_RS12660 - 2132435..2132626 (-) 192 WP_162098494.1 hypothetical protein -
  EP178_RS12665 (NgFC428_02198) - 2132644..2133615 (-) 972 Protein_2163 siderophore ABC transporter substrate-binding protein -
  EP178_RS12670 (NgFC428_02199) fetA 2133767..2135938 (-) 2172 WP_125121556.1 TonB-dependent siderophore receptor FetA/FrpB -
  EP178_RS12675 (NgFC428_02200) - 2136446..2136736 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34317.63 Da        Isoelectric Point: 10.3380

>NTDB_id=58346 EP178_RS12655 WP_047924479.1 2131448..2132416(-) (ceuB) [Neisseria gonorrhoeae strain FC428]
MTAKPFSLNLANLLLPAVLFAVSLSVGIADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVCQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=58346 EP178_RS12655 WP_047924479.1 2131448..2132416(-) (ceuB) [Neisseria gonorrhoeae strain FC428]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CATTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAGCTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGCCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

40.864

93.478

0.382

Multiple sequence alignment