Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   KU217_RS01575 Genome accession   NZ_CP077835
Coordinates   334259..334732 (+) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain DETAB-P65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329259..339732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU217_RS01550 (KU217_01550) - 329722..331827 (-) 2106 WP_001117590.1 HD domain-containing protein -
  KU217_RS01555 (KU217_01555) - 331867..331997 (-) 131 Protein_296 hypothetical protein -
  KU217_RS01560 (KU217_01560) rpoZ 332036..332314 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KU217_RS01565 (KU217_01565) gmk 332387..333016 (-) 630 WP_000015937.1 guanylate kinase -
  KU217_RS01570 (KU217_01570) ispH 333139..334089 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KU217_RS01575 (KU217_01575) fimU 334259..334732 (+) 474 WP_001214059.1 GspH/FimT family pseudopilin Machinery gene
  KU217_RS01580 (KU217_01580) pilV 334726..335286 (+) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  KU217_RS01585 (KU217_01585) pilW 335287..336288 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  KU217_RS01590 (KU217_01590) pilX 336285..337103 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=583457 KU217_RS01575 WP_001214059.1 334259..334732(+) (fimU) [Acinetobacter baumannii strain DETAB-P65]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=583457 KU217_RS01575 WP_001214059.1 334259..334732(+) (fimU) [Acinetobacter baumannii strain DETAB-P65]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACTCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994