Detailed information NTG0583443

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MW403_RS18140
• Genome accession: NZ_CP095514
• Coordinates: 3797264..3798256 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GN02323
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3792264..3803256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MW403_RS18120 (MW403_18150)	ygbM	3792895..3793671 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
MW403_RS18125 (MW403_18155)	ygbN	3793760..3795124 (+)	1365	WP_000104433.1	GntP family transporter	-
MW403_RS18130 (MW403_18160)	-	3795267..3796310 (-)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
MW403_RS18135 (MW403_18165)	-	3796535..3797086 (+)	552	WP_001179443.1	flavodoxin family protein	-
MW403_RS18140 (MW403_18170)	rpoS	3797264..3798256 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
MW403_RS18145 (MW403_18175)	nlpD	3798319..3799413 (-)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
MW403_RS18150 (MW403_18180)	pcm	3799598..3800224 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
MW403_RS18155 (MW403_18185)	surE	3800218..3800979 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MW403_RS18160 (MW403_18190)	truD	3800960..3802009 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
MW403_RS18165 (MW403_18195)	ispF	3802006..3802485 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MW403_RS18170 (MW403_18200)	ispD	3802485..3803195 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=583443 MW403_RS18140 WP_000081550.1 3797264..3798256(-) (rpoS) [Escherichia coli strain GN02323]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=583443 MW403_RS18140 WP_000081550.1 3797264..3798256(-) (rpoS) [Escherichia coli strain GN02323]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715