Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MW403_RS14690 Genome accession   NZ_CP095514
Coordinates   3049651..3050127 (+) Length   158 a.a.
NCBI ID   WP_001351157.1    Uniprot ID   -
Organism   Escherichia coli strain GN02323     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3044651..3055127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW403_RS14660 (MW403_14685) - 3044806..3045711 (+) 906 WP_000203550.1 diguanylate cyclase regulator RdcB family protein -
  MW403_RS14665 (MW403_14690) - 3045708..3046778 (+) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  MW403_RS14670 (MW403_14695) - 3046914..3047591 (+) 678 WP_001362823.1 hypothetical protein -
  MW403_RS14675 (MW403_14700) - 3047607..3048017 (+) 411 WP_000846704.1 hypothetical protein -
  MW403_RS14680 (MW403_14705) - 3048238..3049059 (+) 822 WP_001234569.1 DUF932 domain-containing protein -
  MW403_RS14685 (MW403_14710) - 3049150..3049635 (+) 486 WP_000213703.1 antirestriction protein -
  MW403_RS14690 (MW403_14715) radC 3049651..3050127 (+) 477 WP_001351157.1 JAB domain-containing protein Machinery gene
  MW403_RS14695 (MW403_14720) yeeT 3050196..3050417 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  MW403_RS14700 (MW403_14725) cbeA 3050491..3050859 (+) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  MW403_RS14705 (MW403_14730) cbtA 3050948..3051322 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  MW403_RS14710 (MW403_14735) yeeW 3051319..3051513 (+) 195 WP_000988601.1 DUF5983 family protein -
  MW403_RS14715 (MW403_14740) - 3051547..3051639 (+) 93 Protein_2889 DUF957 domain-containing protein -
  MW403_RS25630 - 3051928..3052065 (-) 138 Protein_2890 transposase domain-containing protein -
  MW403_RS25445 - 3052128..3052310 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  MW403_RS14725 (MW403_14750) tmaR 3052411..3052740 (-) 330 WP_000450409.1 DUF496 family protein -
  MW403_RS14730 (MW403_14755) yeeA 3052912..3053970 (-) 1059 WP_001200890.1 FUSC family protein -
  MW403_RS14735 (MW403_14760) sbmC 3054168..3054641 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17593.25 Da        Isoelectric Point: 6.9180

>NTDB_id=583429 MW403_RS14690 WP_001351157.1 3049651..3050127(+) (radC) [Escherichia coli strain GN02323]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKCALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=583429 MW403_RS14690 WP_001351157.1 3049651..3050127(+) (radC) [Escherichia coli strain GN02323]
ATGCAACAGATTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTATATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAATGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399