Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MW398_RS20880 Genome accession   NZ_CP095505
Coordinates   4087382..4087987 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain GN02050     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4082382..4092987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW398_RS20850 (MW398_20845) rsmS 4083087..4083248 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  MW398_RS20855 (MW398_20850) priC 4083262..4083789 (-) 528 WP_059342394.1 primosomal replication protein N'' -
  MW398_RS20860 (MW398_20855) ybaN 4083859..4084236 (+) 378 WP_001188905.1 DUF454 family protein -
  MW398_RS20865 (MW398_20860) apt 4084389..4084940 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  MW398_RS20870 (MW398_20865) dnaX 4085069..4087000 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  MW398_RS20875 (MW398_20870) ybaB 4087053..4087382 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  MW398_RS20880 (MW398_20875) recR 4087382..4087987 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  MW398_RS20885 (MW398_20880) htpG 4088097..4089971 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  MW398_RS20890 (MW398_20885) adk 4090152..4090796 (+) 645 WP_021523796.1 adenylate kinase -
  MW398_RS20895 (MW398_20890) hemH 4090928..4091890 (+) 963 WP_001250114.1 ferrochelatase -
  MW398_RS20900 (MW398_20895) aes 4091865..4092833 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=583286 MW398_RS20880 WP_001195025.1 4087382..4087987(+) (recR) [Escherichia coli strain GN02050]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=583286 MW398_RS20880 WP_001195025.1 4087382..4087987(+) (recR) [Escherichia coli strain GN02050]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443