Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MW398_RS14605 Genome accession   NZ_CP095505
Coordinates   2766751..2768748 (+) Length   665 a.a.
NCBI ID   WP_021537831.1    Uniprot ID   -
Organism   Escherichia coli strain GN02050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2761751..2773748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW398_RS14580 (MW398_14570) - 2762401..2762646 (-) 246 WP_001445370.1 hypothetical protein -
  MW398_RS14585 (MW398_14575) - 2762721..2762978 (-) 258 WP_021523612.1 hypothetical protein -
  MW398_RS14590 (MW398_14580) tssD 2762975..2764108 (-) 1134 WP_001278761.1 type VI secretion system tube protein TssD -
  MW398_RS14595 (MW398_14585) hxlB 2764593..2765150 (+) 558 WP_000339041.1 6-phospho-3-hexuloisomerase -
  MW398_RS14600 (MW398_14590) ptsG 2765192..2766700 (+) 1509 WP_000037973.1 glucose-specific PTS transporter subunit IIBC -
  MW398_RS14605 (MW398_14595) recP/tkt 2766751..2768748 (+) 1998 WP_021537831.1 transketolase Machinery gene
  MW398_RS14610 (MW398_14600) - 2768778..2769623 (-) 846 WP_001060030.1 MurR/RpiR family transcriptional regulator -
  MW398_RS14615 (MW398_14605) - 2769823..2770728 (-) 906 WP_000470718.1 LysR substrate-binding domain-containing protein -
  MW398_RS14620 (MW398_14610) - 2770806..2772029 (-) 1224 WP_001227356.1 cytosine permease -
  MW398_RS14625 (MW398_14615) - 2772055..2772444 (-) 390 WP_000214035.1 glutamyl-tRNA amidotransferase -
  MW398_RS14630 (MW398_14620) arcC 2772461..2773417 (-) 957 WP_000240544.1 carbamate kinase -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 73028.70 Da        Isoelectric Point: 5.7465

>NTDB_id=583262 MW398_RS14605 WP_021537831.1 2766751..2768748(+) (recP/tkt) [Escherichia coli strain GN02050]
MNSQLLANAIRMLSVDAIQKANSGHPGAPMGMADIAEVVWRRHLRHNPKNPQWFNRDRYVQSNGHGSMLIYALLHLTGYD
LSMDDIRDFRQLHSRTPGHPEYGYTPGVETTTGPLGQGVANAVGMAIAEKALAAEFNKPGFNIVDHHTWLFLGDGCLMEG
ISHEACGLAGTLKLGNLIAIWDDNGISIDGHVEGWFAEDTAVRFRAYGWHVIEGVDGHDPEAVDAAVREAKSVTDKPSLL
CCKTIIGFGSPNKANSHDCHGSALGADEVALVRERLQWPYAPFEIPGEIYAEWDATEKGAQVQQEWDALFADYAKQWPEL
AAEFTRRMKGDLPAGWVENMQKYVHDLQSHPAALATRQVSQKCLNHFADMLPELMGGSADLSPSNLTRHQKSVDFTGENP
AGNYISYGVREFGMSTIMNGLALHGGFIPYGGTFLMFMEYARNALRMAALMKIRSVFVYTHDTIGLGEDGPTHQPVEQLA
SLRLTPNMETWRGCDQVEVAVAWQQAIERKDGPTSLVLTRQPLAQQPRTAAQLAEIARGGYVLSDCDGQPEMILISAGSE
IELVVSAAKALTEEGRKVRVVSLPCTERFDNQDAAYKESVLPKAVRKRLAVEASIAGFWERYVGLDGKVIGMTSFGESAP
ANVLFKHFGFTPENVLAQARELLNS

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=583262 MW398_RS14605 WP_021537831.1 2766751..2768748(+) (recP/tkt) [Escherichia coli strain GN02050]
ATGAATTCACAATTACTGGCTAACGCCATCCGGATGTTAAGTGTTGATGCGATCCAGAAAGCGAACTCCGGTCATCCGGG
CGCGCCGATGGGGATGGCGGATATTGCCGAAGTGGTCTGGCGTCGTCACCTGCGTCATAACCCAAAAAATCCGCAGTGGT
TTAACCGCGACCGCTATGTTCAGTCGAACGGTCACGGCTCTATGTTGATTTACGCTTTGCTGCATCTTACAGGCTACGAC
CTGTCGATGGATGATATTCGCGACTTTCGTCAGCTCCACTCCCGCACGCCGGGTCATCCAGAATATGGTTATACGCCGGG
TGTTGAAACCACCACCGGCCCGTTGGGGCAGGGCGTAGCTAATGCGGTGGGGATGGCGATTGCGGAGAAGGCGCTGGCGG
CAGAATTTAACAAACCGGGCTTTAATATTGTTGATCATCACACATGGCTATTTTTGGGTGATGGCTGCCTGATGGAAGGG
ATCTCCCACGAGGCCTGTGGTCTTGCAGGAACGCTGAAGCTCGGCAATCTGATTGCTATCTGGGACGATAACGGTATTTC
GATCGATGGTCACGTAGAAGGCTGGTTTGCTGAAGATACGGCTGTCCGTTTTCGTGCCTACGGCTGGCATGTCATTGAAG
GCGTTGATGGTCACGATCCAGAAGCGGTAGATGCTGCGGTGCGTGAAGCGAAAAGCGTCACGGATAAGCCCAGTCTGCTG
TGCTGCAAAACGATTATCGGTTTTGGTTCGCCAAATAAAGCCAACAGCCACGATTGCCACGGCTCGGCGCTGGGTGCAGA
TGAAGTGGCGCTGGTGCGTGAACGTCTGCAATGGCCGTATGCCCCTTTCGAAATTCCTGGTGAAATTTATGCCGAATGGG
ATGCGACCGAGAAAGGCGCGCAGGTTCAACAGGAATGGGATGCACTGTTTGCCGACTACGCGAAGCAGTGGCCGGAACTG
GCGGCGGAGTTTACTCGTCGCATGAAGGGTGATTTGCCTGCTGGCTGGGTCGAGAATATGCAGAAATATGTGCACGATCT
GCAATCCCATCCGGCGGCGCTGGCAACCCGTCAGGTTAGCCAGAAATGCCTCAATCACTTCGCAGATATGCTGCCGGAAC
TGATGGGCGGCTCGGCGGACTTGTCGCCCTCTAACCTGACTCGCCATCAGAAATCGGTTGATTTCACCGGAGAAAATCCG
GCGGGGAATTACATCTCCTATGGCGTGCGTGAATTTGGTATGTCGACCATCATGAACGGTCTTGCGCTGCATGGTGGGTT
TATCCCTTACGGCGGTACTTTCCTGATGTTTATGGAATATGCGCGTAATGCACTGCGCATGGCGGCGCTGATGAAGATCC
GCTCGGTGTTTGTTTATACCCACGATACCATCGGCCTGGGCGAAGACGGCCCGACACATCAGCCCGTTGAGCAACTGGCG
TCGCTGCGTCTGACGCCGAATATGGAAACCTGGCGCGGTTGCGATCAGGTGGAAGTGGCGGTGGCCTGGCAACAGGCGAT
TGAGCGCAAAGATGGCCCAACGTCGTTGGTATTAACGCGCCAACCTCTGGCGCAACAGCCGCGCACCGCTGCACAGTTGG
CAGAGATTGCGCGTGGTGGTTATGTACTGAGTGATTGTGACGGTCAGCCTGAGATGATCCTCATTTCTGCGGGTTCAGAG
ATTGAGTTAGTGGTCAGCGCCGCAAAAGCGTTAACGGAAGAAGGGCGTAAAGTTCGCGTGGTTTCCCTGCCGTGTACCGA
GCGTTTCGATAATCAGGATGCGGCGTACAAAGAGTCGGTATTGCCAAAAGCTGTACGCAAACGTCTGGCGGTAGAAGCCA
GCATCGCCGGATTCTGGGAACGCTACGTGGGCCTGGACGGTAAAGTGATCGGCATGACGAGCTTTGGTGAGTCTGCTCCG
GCGAATGTGTTGTTCAAACACTTTGGTTTTACGCCGGAAAATGTCCTGGCGCAGGCGCGTGAGCTACTGAACAGCTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(540-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.193

99.098

0.468