Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MW398_RS04295 Genome accession   NZ_CP095505
Coordinates   642935..644362 (+) Length   475 a.a.
NCBI ID   WP_072251764.1    Uniprot ID   -
Organism   Escherichia coli strain GN02050     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 637935..649362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW398_RS04265 (MW398_04255) pduU 638313..638663 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  MW398_RS04270 (MW398_04260) - 638668..639111 (+) 444 WP_001189443.1 EutP/PduV family microcompartment system protein -
  MW398_RS04275 (MW398_04265) tmaR 639211..639540 (-) 330 WP_000450409.1 DUF496 family protein -
  MW398_RS04280 (MW398_04270) yeeA 639712..640770 (-) 1059 WP_001200890.1 FUSC family protein -
  MW398_RS04285 (MW398_04275) sbmC 640968..641441 (-) 474 WP_021524294.1 DNA gyrase inhibitor SbmC -
  MW398_RS04290 (MW398_04280) dacD 641560..642726 (-) 1167 WP_021538052.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MW398_RS04295 (MW398_04285) sbcB 642935..644362 (+) 1428 WP_072251764.1 exodeoxyribonuclease I Machinery gene
  MW398_RS04300 (MW398_04290) plaP 644436..645794 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MW398_RS04305 (MW398_04295) yoeI 645784..645846 (-) 63 WP_010723108.1 membrane protein YoeI -
  MW398_RS04310 (MW398_04300) yeeY 646061..646990 (-) 930 WP_000803346.1 LysR substrate-binding domain-containing protein -
  MW398_RS04315 (MW398_04305) yeeZ 647036..647860 (-) 825 WP_021524296.1 SDR family oxidoreductase -
  MW398_RS04320 (MW398_04310) yoeB 647943..648197 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  MW398_RS04325 (MW398_04315) yefM 648194..648445 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  MW398_RS04330 (MW398_04320) hisL 648728..648778 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54532.83 Da        Isoelectric Point: 5.4699

>NTDB_id=583215 MW398_RS04295 WP_072251764.1 642935..644362(+) (sbcB) [Escherichia coli strain GN02050]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANCIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLQALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=583215 MW398_RS04295 WP_072251764.1 642935..644362(+) (sbcB) [Escherichia coli strain GN02050]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATTGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACAGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-189)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581