Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KU669_RS11345 Genome accession   NZ_CP077816
Coordinates   2288240..2288836 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain FF1043     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2283240..2293836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU669_RS11330 (KU669_11295) helD 2283448..2285502 (-) 2055 WP_065811525.1 DNA helicase IV -
  KU669_RS11335 (KU669_11300) - 2285627..2286073 (+) 447 WP_002898425.1 YccF domain-containing protein -
  KU669_RS11340 (KU669_11305) yccS 2286091..2288226 (+) 2136 WP_021465041.1 YccS family putative transporter -
  KU669_RS11345 (KU669_11310) sxy/tfoX 2288240..2288836 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  KU669_RS11350 (KU669_11315) sulA 2289185..2289694 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  KU669_RS11355 (KU669_11320) ompA 2290047..2291111 (+) 1065 WP_064278948.1 porin OmpA -
  KU669_RS11360 (KU669_11325) matP 2291243..2291695 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  KU669_RS11365 (KU669_11330) - 2291881..2293638 (+) 1758 WP_210711409.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=583149 KU669_RS11345 WP_004179217.1 2288240..2288836(-) (sxy/tfoX) [Klebsiella pneumoniae strain FF1043]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=583149 KU669_RS11345 WP_004179217.1 2288240..2288836(-) (sxy/tfoX) [Klebsiella pneumoniae strain FF1043]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51