Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MU520_RS10010 Genome accession   NZ_CP095463
Coordinates   2045155..2045937 (-) Length   260 a.a.
NCBI ID   WP_002935335.1    Uniprot ID   -
Organism   Streptococcus suis strain TJS56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2040155..2050937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU520_RS09995 purC 2043085..2043792 (-) 708 WP_011921646.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  MU520_RS10000 - 2043910..2044158 (-) 249 WP_011921645.1 phosphopantetheine-binding protein -
  MU520_RS10005 plsX 2044151..2045158 (-) 1008 WP_011921644.1 phosphate acyltransferase PlsX -
  MU520_RS10010 recO 2045155..2045937 (-) 783 WP_002935335.1 DNA repair protein RecO Machinery gene
  MU520_RS10015 - 2045924..2047102 (-) 1179 WP_011922532.1 pyridoxal phosphate-dependent aminotransferase -
  MU520_RS10020 - 2047189..2048157 (-) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  MU520_RS10025 - 2048260..2049516 (-) 1257 WP_012774880.1 CHAP domain-containing protein -
  MU520_RS10030 mreD 2049601..2050116 (-) 516 WP_002935339.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30486.97 Da        Isoelectric Point: 5.4193

>NTDB_id=583069 MU520_RS10010 WP_002935335.1 2045155..2045937(-) (recO) [Streptococcus suis strain TJS56]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=583069 MU520_RS10010 WP_002935335.1 2045155..2045937(-) (recO) [Streptococcus suis strain TJS56]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGTAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGGCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCAAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673