Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   MU520_RS09430 Genome accession   NZ_CP095463
Coordinates   1950948..1951358 (-) Length   136 a.a.
NCBI ID   WP_011921724.1    Uniprot ID   -
Organism   Streptococcus suis strain TJS56     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1945948..1956358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU520_RS09410 - 1946523..1947779 (-) 1257 WP_011921729.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MU520_RS09415 - 1947835..1948386 (-) 552 WP_012774908.1 folate family ECF transporter S component -
  MU520_RS09420 - 1948701..1949888 (-) 1188 WP_012775422.1 acetate kinase -
  MU520_RS09425 comGH 1949938..1950891 (-) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  MU520_RS09430 comGG 1950948..1951358 (-) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG Machinery gene
  MU520_RS09435 comGF/cglF 1951336..1951770 (-) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  MU520_RS09440 comGE 1951757..1952050 (-) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  MU520_RS09445 comGD 1952022..1952429 (-) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD Machinery gene
  MU520_RS09450 comGC 1952410..1952691 (-) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  MU520_RS09455 comGB 1952693..1953730 (-) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  MU520_RS09460 comGA 1953642..1954592 (-) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  MU520_RS09465 - 1954678..1955621 (+) 944 Protein_1854 S66 peptidase family protein -
  MU520_RS09470 - 1955656..1956021 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15303.73 Da        Isoelectric Point: 8.3464

>NTDB_id=583052 MU520_RS09430 WP_011921724.1 1950948..1951358(-) (comGG) [Streptococcus suis strain TJS56]
MLLKKKVKAGILLYALLMLAVFSLLLQFYLHRQEAESRLVQVARQETTAYIMAQMVLDKVEQDLQVEKIVTGAVVNEKEA
NLTTGSKQKENRGRVSFQEGQARYQLKGDQLLVTVELTSDGLYTYQFPFGLSSEGG

Nucleotide


Download         Length: 411 bp        

>NTDB_id=583052 MU520_RS09430 WP_011921724.1 1950948..1951358(-) (comGG) [Streptococcus suis strain TJS56]
ATGCTTTTAAAGAAAAAAGTTAAGGCTGGCATCCTACTCTATGCCCTTTTGATGCTGGCTGTTTTTAGTCTCTTGCTTCA
GTTTTATCTCCACCGCCAAGAGGCTGAGAGTCGCTTGGTACAGGTGGCAAGGCAAGAAACGACTGCTTATATCATGGCTC
AGATGGTCTTGGACAAGGTCGAGCAGGACCTGCAAGTAGAAAAAATAGTTACGGGAGCGGTAGTGAATGAAAAGGAAGCA
AATTTAACCACAGGTTCTAAGCAGAAGGAGAATAGAGGAAGGGTCTCCTTTCAAGAGGGACAGGCTCGTTATCAACTTAA
AGGAGACCAACTATTGGTTACAGTTGAGTTAACAAGTGATGGTCTGTATACCTATCAATTTCCTTTTGGGCTATCATCAG
AAGGAGGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

36.296

99.265

0.36
  comGG Streptococcus mutans UA159

36.296

99.265

0.36