Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KU665_RS09655 Genome accession   NZ_CP077806
Coordinates   2008993..2009589 (-) Length   198 a.a.
NCBI ID   WP_023341259.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain FF979     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1991529..2011871 2008993..2009589 within 0


Gene organization within MGE regions


Location: 1991529..2011871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU665_RS26615 - 1995466..2002119 (+) 6654 WP_419096247.1 hypothetical protein -
  KU665_RS26620 - 2002359..2002544 (-) 186 Protein_1900 BapA/Bap/LapF family prefix-like domain-containing protein -
  KU665_RS09630 (KU665_09630) - 2003163..2003576 (-) 414 WP_004144085.1 CoA-binding protein -
  KU665_RS09635 (KU665_09635) mgsA 2003731..2004189 (+) 459 WP_002898432.1 methylglyoxal synthase -
  KU665_RS09640 (KU665_09640) helD 2004201..2006255 (-) 2055 WP_117095998.1 DNA helicase IV -
  KU665_RS09645 (KU665_09645) - 2006380..2006826 (+) 447 WP_002898425.1 YccF domain-containing protein -
  KU665_RS09650 (KU665_09650) yccS 2006844..2008979 (+) 2136 WP_002898422.1 YccS family putative transporter -
  KU665_RS09655 (KU665_09655) sxy/tfoX 2008993..2009589 (-) 597 WP_023341259.1 TfoX/Sxy family DNA transformation protein Regulator
  KU665_RS09660 (KU665_09660) sulA 2009938..2010447 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  KU665_RS09665 (KU665_09665) ompA 2010801..2011871 (+) 1071 WP_002898408.1 porin OmpA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22536.09 Da        Isoelectric Point: 10.2327

>NTDB_id=583028 KU665_RS09655 WP_023341259.1 2008993..2009589(-) (sxy/tfoX) [Klebsiella pneumoniae strain FF979]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIGGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=583028 KU665_RS09655 WP_023341259.1 2008993..2009589(-) (sxy/tfoX) [Klebsiella pneumoniae strain FF979]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACCACCGACGGGCATCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGGCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.795

98.485

0.51