Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KUE09_RS01680 Genome accession   NZ_CP077801
Coordinates   351319..352137 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 40288     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346319..357137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUE09_RS01645 (KUE09_01645) - 346901..347031 (-) 131 Protein_314 hypothetical protein -
  KUE09_RS01650 (KUE09_01650) rpoZ 347070..347348 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KUE09_RS01655 (KUE09_01655) gmk 347421..348050 (-) 630 WP_000015937.1 guanylate kinase -
  KUE09_RS01660 (KUE09_01660) ispH 348173..349123 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KUE09_RS01665 (KUE09_01665) fimU 349293..349766 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KUE09_RS01670 (KUE09_01670) pilV 349760..350320 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KUE09_RS01675 (KUE09_01675) pilW 350321..351322 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  KUE09_RS01680 (KUE09_01680) pilX 351319..352137 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KUE09_RS01685 (KUE09_01685) pilY1 352149..356003 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  KUE09_RS01690 (KUE09_01690) pilY2 356016..356498 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  KUE09_RS01695 (KUE09_01695) pilE 356495..356920 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=582955 KUE09_RS01680 WP_000149374.1 351319..352137(+) (pilX) [Acinetobacter baumannii strain 40288]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=582955 KUE09_RS01680 WP_000149374.1 351319..352137(+) (pilX) [Acinetobacter baumannii strain 40288]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993