Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KTV86_RS03355 Genome accession   NZ_CP077760
Coordinates   648005..648610 (-) Length   201 a.a.
NCBI ID   WP_001202377.1    Uniprot ID   B5R6C5
Organism   Salmonella enterica subsp. enterica serovar Gallinarum strain 07Q015     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 643005..653610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTV86_RS03340 (KTV86_03310) helD 643222..645276 (-) 2055 WP_223671756.1 DNA helicase IV -
  KTV86_RS03345 (KTV86_03315) - 645400..645846 (+) 447 WP_001261222.1 YccF domain-containing protein -
  KTV86_RS03350 (KTV86_03320) yccS 645865..648018 (+) 2154 WP_000950876.1 YccS family putative transporter -
  KTV86_RS03355 (KTV86_03325) sxy/tfoX 648005..648610 (-) 606 WP_001202377.1 TfoX/Sxy family DNA transformation protein Regulator
  KTV86_RS03360 (KTV86_03330) sulA 648827..649336 (+) 510 WP_000288726.1 SOS-induced cell division inhibitor SulA -
  KTV86_RS03365 (KTV86_03335) ompA 649692..650744 (+) 1053 WP_001674965.1 porin OmpA -
  KTV86_RS03370 (KTV86_03340) matP 650816..651268 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  KTV86_RS03375 (KTV86_03345) - 651454..653214 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23151.90 Da        Isoelectric Point: 8.7387

>NTDB_id=582817 KTV86_RS03355 WP_001202377.1 648005..648610(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Gallinarum strain 07Q015]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKNSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=582817 KTV86_RS03355 WP_001202377.1 648005..648610(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Gallinarum strain 07Q015]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAAAACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5R6C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751