Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MUY23_RS11715 Genome accession   NZ_CP095162
Coordinates   2364084..2364701 (-) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain TJS75     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2359084..2369701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUY23_RS11695 - 2359776..2360609 (+) 834 WP_004194181.1 energy-coupling factor transporter transmembrane component T -
  MUY23_RS11700 - 2360769..2360972 (+) 204 WP_004194179.1 cold-shock protein -
  MUY23_RS11705 rsmG 2361162..2361875 (-) 714 WP_004194177.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  MUY23_RS11710 pbp1a 2361929..2364103 (-) 2175 WP_004194174.1 penicillin-binding protein PBP1A -
  MUY23_RS11715 recU 2364084..2364701 (-) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  MUY23_RS11720 - 2364767..2365306 (+) 540 WP_004194171.1 DUF1273 domain-containing protein -
  MUY23_RS11725 gpsB 2365375..2365710 (+) 336 WP_004194167.1 cell division regulator GpsB -
  MUY23_RS11735 - 2366267..2367433 (+) 1167 WP_004194163.1 class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=582802 MUY23_RS11715 WP_004194173.1 2364084..2364701(-) (recU) [Streptococcus suis strain TJS75]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=582802 MUY23_RS11715 WP_004194173.1 2364084..2364701(-) (recU) [Streptococcus suis strain TJS75]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473