Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   MUY23_RS04075 Genome accession   NZ_CP095162
Coordinates   807495..808565 (+) Length   356 a.a.
NCBI ID   WP_002935006.1    Uniprot ID   -
Organism   Streptococcus suis strain TJS75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 802495..813565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUY23_RS04050 - 803216..803548 (+) 333 WP_002935001.1 putative DNA-binding protein -
  MUY23_RS04055 ffh 803561..805135 (+) 1575 WP_002935002.1 signal recognition particle protein -
  MUY23_RS04060 - 805329..805997 (+) 669 WP_002935003.1 SatD family protein -
  MUY23_RS04065 - 806001..806741 (+) 741 WP_002935004.1 DUF3307 domain-containing protein -
  MUY23_RS04070 - 806807..807328 (+) 522 WP_002935005.1 AAA family ATPase -
  MUY23_RS04075 xerS 807495..808565 (+) 1071 WP_002935006.1 tyrosine recombinase XerS Machinery gene
  MUY23_RS04080 - 808635..810143 (-) 1509 WP_013730362.1 phosphoglucomutase -
  MUY23_RS04085 - 810219..811160 (-) 942 WP_002935009.1 sensor histidine kinase -
  MUY23_RS04090 braR 811157..811822 (-) 666 WP_009909826.1 response regulator transcription factor Regulator
  MUY23_RS04095 - 811861..812118 (-) 258 WP_002935012.1 type II toxin-antitoxin system RelE/ParE family toxin -
  MUY23_RS04100 - 812108..812347 (-) 240 WP_002935014.1 DUF6290 family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41545.71 Da        Isoelectric Point: 9.2257

>NTDB_id=582736 MUY23_RS04075 WP_002935006.1 807495..808565(+) (xerS) [Streptococcus suis strain TJS75]
MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVSVERIADIPLDILEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=582736 MUY23_RS04075 WP_002935006.1 807495..808565(+) (xerS) [Streptococcus suis strain TJS75]
ATGAGACGCGAGTTATTACTAGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCAGTC
AAAATTGGCTGTGCCTTACAGTTTTACTACCTTATATGAATACTTGAAAGAATACCGTCGATTCTTTGAGTGGTTACAGG
ATTCGGATTTGGTATCTGTGGAACGGATTGCTGACATTCCTTTGGATATTCTGGAACATTTGACAAAAAAAGATATGGAA
GCCTTTATTCTTTATCTGCGGGAGCGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTGTCGGCTCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAATGTCATGAAAAAGGTATCTACCAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCTGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACCATGGAGTTCTTGGACTATGTGGACAAGGAATACCAAGTCAATCTCTCTAAACGTGCCCT
CTCCTCTTTCCAGAAAAATAAGGAGCGAGATTTGGCGATTCTGGCACTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTAAATCTCAATATGATGATTATCGAAGTAACCCGTAAGGGTGGTAAGCGGGACTCG
GTCAATGTGGCTGGGTTTGCTAAGCCCTATCTGGAAGCCTATATGAGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACGGCCTTCTTCCTGTCCGAATACCGTGGTCTACCCAATCGTATCGATGCTTCTTCTATTGAAAAAATGGTTGCCA
AGTACTCTGCGGACTTCAAGATACGCGTAACCCCCCACAAACTCCGTCATACCTTGGCAACTCGCCTATACGACGCCACA
AAGTCGCAAGTTCTGGTCAGTCATCAGCTGGGCCACGCCAATACTCAGGTCACTGACCTCTACACCCATATAGTCAATGA
TGAGCAAAAAAATGCACTGGATCAATTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(190-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829