Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LNL76_RS10375 Genome accession   NZ_CP095161
Coordinates   2086679..2088691 (+) Length   670 a.a.
NCBI ID   WP_268388522.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ZJ-C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2081679..2093691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNL76_RS10355 - 2082339..2083325 (+) 987 WP_110479499.1 TRAP transporter substrate-binding protein -
  LNL76_RS10360 - 2083387..2084856 (+) 1470 WP_110479498.1 FGGY-family carbohydrate kinase -
  LNL76_RS10365 - 2084900..2085760 (+) 861 WP_110480313.1 L-ribulose-5-phosphate 3-epimerase -
  LNL76_RS10370 araD 2085754..2086449 (+) 696 WP_110503404.1 L-ribulose-5-phosphate 4-epimerase -
  LNL76_RS10375 recP/tkt 2086679..2088691 (+) 2013 WP_268388522.1 transketolase Machinery gene
  LNL76_RS10380 - 2088940..2089590 (+) 651 WP_017806290.1 cell division ATP-binding protein FtsE -
  LNL76_RS10385 ftsX 2089601..2090515 (+) 915 WP_110479839.1 permease-like cell division protein FtsX -
  LNL76_RS10390 yggU 2090547..2090834 (-) 288 WP_017806288.1 DUF167 family protein YggU -
  LNL76_RS10395 - 2090834..2091397 (-) 564 WP_017806287.1 YggT family protein -
  LNL76_RS10400 corA 2091414..2092361 (-) 948 WP_017806286.1 magnesium/cobalt transporter CorA -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 73573.11 Da        Isoelectric Point: 5.6255

>NTDB_id=582680 LNL76_RS10375 WP_268388522.1 2086679..2088691(+) (recP/tkt) [Avibacterium paragallinarum strain ZJ-C]
MRRTKMSNRKELANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWREFLVHNPTNPKWANRDRFVLSNGHGSMLIYSLL
HLTGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGVETTTGPLGQGITNAVGMAIAEKTLAAQFNRPGHEIIDHYTYAFLGD
GCLMEGISHEACSLAGTLGLGKLIAFYDDNNISIDGEVDGWFTDNTKERFEAYNWQVIGQIDGHNPEAIAEAIKQAQAEK
ERPTLIICKTTIGYGSPNKAGSHDSHGAPLGDEEIALTRQNLGWNYAPFEIPADIYSQWDAKEKGKQAEAVWNEKWTAYS
QAHPELSAELARRLSGELPANWAAESQAFIEKLQANPASIASRKASQNAIEAYAPLLPEFLGGSADLAGSNLTLWSGSRP
IRATENQDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFMEYAHNAVRMAALMKQRVLFVYTHDSIGLGEDGPTH
QPVEQTASLRLIPNLETWRPCDQVESAIAWKAAVERKDGPSAMIFSRQNLTQMDRTPAQLADVARGGYILTDSEGTPDLI
FIATGSEVELVVKAAEQLRQEGKKIRVVSMPSTNVFDKQDEAYRESVLPSSVTKRVAVEAGISEFWYKYVGFGGRIVGMN
TFGESAPAGELFKLFGFTVENVVAKAKEIL

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=582680 LNL76_RS10375 WP_268388522.1 2086679..2088691(+) (recP/tkt) [Avibacterium paragallinarum strain ZJ-C]
ATTAGGAGAACAAAAATGTCGAATCGAAAAGAGTTAGCGAATGCTATTCGTTTTTTAAGTATGGACGCGGTGCAAAAAGC
CAAATCAGGCCACCCTGGTGCACCAATGGGAATGGCGGACATTGCGGAAGTGTTGTGGCGTGAGTTTTTAGTACATAATC
CAACCAATCCAAAATGGGCAAACCGCGATAGATTCGTGTTATCAAATGGTCACGGTTCAATGTTGATTTACAGCCTTTTA
CATTTAACAGGCTATGATTTATCTATCGAAGATTTAAAACAATTCCGCCAATTACATTCTAAAACCCCGGGCCACCCGGA
ATATGGCTATGCACCGGGGGTAGAAACCACCACGGGACCATTGGGTCAAGGGATCACCAACGCAGTAGGTATGGCGATTG
CGGAGAAAACTCTCGCGGCACAATTTAACCGCCCAGGTCACGAGATTATCGACCACTACACTTACGCTTTTTTAGGTGAT
GGCTGTTTAATGGAAGGGATTTCCCACGAAGCTTGTTCCCTTGCGGGTACATTGGGCTTAGGTAAATTAATCGCGTTCTA
TGATGACAACAATATTTCTATTGATGGCGAAGTGGACGGCTGGTTTACCGATAACACCAAAGAGCGTTTTGAAGCCTATA
ACTGGCAAGTTATCGGGCAAATTGACGGGCATAATCCTGAAGCTATTGCAGAAGCTATTAAACAAGCACAAGCAGAAAAA
GAACGCCCAACCTTGATTATCTGTAAAACTACTATCGGCTATGGCTCGCCAAATAAAGCAGGCTCGCACGATAGTCACGG
CGCGCCATTAGGCGATGAAGAAATCGCATTAACCCGCCAAAATCTTGGTTGGAACTACGCGCCATTTGAAATTCCAGCGG
ACATTTATAGCCAATGGGACGCAAAAGAGAAAGGCAAACAAGCAGAAGCGGTGTGGAATGAAAAATGGACGGCATATAGC
CAAGCTCACCCTGAGTTAAGTGCGGAGCTTGCACGCCGTTTAAGTGGTGAATTACCCGCAAACTGGGCGGCAGAAAGCCA
AGCGTTTATTGAAAAATTACAAGCCAACCCAGCAAGCATTGCAAGCCGTAAAGCCTCACAAAATGCCATTGAAGCCTATG
CACCGTTACTCCCTGAATTTTTAGGTGGTTCGGCAGATTTAGCTGGGTCAAACTTAACCTTATGGTCAGGCTCACGCCCT
ATTCGTGCAACGGAAAATCAAGATGGAAACTACATCAACTACGGCGTGCGTGAGTTTGGAATGTCAGCCATTATGAACGG
TATCGCACTCCACGGCGGCTTCATTCCTTATGGTGCAACCTTCTTAATGTTTATGGAATATGCTCATAATGCAGTGAGAA
TGGCGGCGTTAATGAAACAACGTGTGCTTTTCGTTTACACCCACGATTCTATCGGCTTAGGGGAAGACGGCCCAACCCAC
CAACCTGTGGAGCAAACAGCGTCATTACGTCTAATTCCAAATTTAGAGACGTGGCGTCCGTGTGACCAAGTGGAATCTGC
CATTGCGTGGAAAGCGGCTGTTGAGCGTAAAGATGGCCCAAGTGCGATGATTTTCAGCCGTCAAAATCTCACTCAAATGG
ACAGAACCCCAGCCCAATTAGCTGATGTGGCTCGCGGTGGTTATATCTTAACCGATAGCGAAGGCACACCTGATTTAATC
TTTATTGCGACAGGTTCTGAAGTGGAATTAGTGGTGAAAGCGGCCGAGCAACTTCGTCAAGAAGGCAAAAAAATCCGTGT
GGTATCAATGCCTTCCACTAACGTATTTGATAAACAAGATGAAGCTTACCGCGAAAGCGTATTGCCAAGCAGCGTAACCA
AACGTGTTGCGGTTGAAGCGGGCATTAGCGAGTTTTGGTACAAATACGTTGGCTTCGGCGGCCGCATTGTGGGAATGAAC
ACCTTTGGTGAATCTGCCCCAGCAGGTGAATTATTCAAACTATTTGGCTTCACCGTAGAAAACGTAGTGGCTAAAGCGAA
AGAAATTTTATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(547-662)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(9-339)

Transketolase, pyrimidine binding domain (Transket_pyr)

(359-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.951

98.358

0.472