Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LNL76_RS08190 Genome accession   NZ_CP095161
Coordinates   1643484..1643990 (-) Length   168 a.a.
NCBI ID   WP_035685396.1    Uniprot ID   A0A0F5EQV1
Organism   Avibacterium paragallinarum strain ZJ-C     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638484..1648990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNL76_RS08165 - 1639426..1639566 (-) 141 WP_165816415.1 hypothetical protein -
  LNL76_RS08170 - 1639597..1640910 (+) 1314 WP_110479111.1 NCS2 family permease -
  LNL76_RS08175 comE1/comEA 1641172..1641528 (+) 357 WP_110479110.1 helix-hairpin-helix domain-containing protein Machinery gene
  LNL76_RS08180 rdgB 1641666..1642262 (+) 597 WP_110479109.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  LNL76_RS08185 hemW 1642262..1643416 (+) 1155 WP_110479108.1 radical SAM family heme chaperone HemW -
  LNL76_RS08190 luxS 1643484..1643990 (-) 507 WP_035685396.1 S-ribosylhomocysteine lyase Regulator
  LNL76_RS08195 - 1644213..1644671 (-) 459 WP_110479107.1 YqaA family protein -
  LNL76_RS08200 - 1644664..1645272 (-) 609 WP_110479106.1 sugar O-acetyltransferase -
  LNL76_RS08205 - 1645273..1645875 (-) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  LNL76_RS08210 - 1646018..1646395 (+) 378 WP_110479105.1 hypothetical protein -
  LNL76_RS08215 ispF 1646528..1647004 (+) 477 WP_110479104.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LNL76_RS08220 truD 1647008..1648015 (+) 1008 WP_110479103.1 tRNA pseudouridine(13) synthase TruD -
  LNL76_RS08225 surE 1648024..1648764 (+) 741 WP_110479102.1 5'/3'-nucleotidase SurE -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19094.95 Da        Isoelectric Point: 5.5568

>NTDB_id=582669 LNL76_RS08190 WP_035685396.1 1643484..1643990(-) (luxS) [Avibacterium paragallinarum strain ZJ-C]
MPLLDSFKVDHTKMNAPAVRVAKIMRTPKGDDITIFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNSEQVEIIDISP
MGCRTGFYMSLIGRPNEQQVVTAWLAAMKDILQVQNQNDIPELNEYQCGTYTEHSLDEAHQIARNILARGVGVNRNDDLL
LDERLLAQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=582669 LNL76_RS08190 WP_035685396.1 1643484..1643990(-) (luxS) [Avibacterium paragallinarum strain ZJ-C]
ATGCCGTTACTTGATAGTTTTAAAGTCGATCATACGAAGATGAATGCTCCCGCCGTGCGTGTTGCAAAAATAATGCGTAC
ACCAAAAGGTGATGACATTACCATTTTCGATTTACGTTTTTGTATTCCAAATAAAGAAATTTTACCGCCGAAAGGGATTC
ATACTCTTGAACATCTTTTTGCAGGTTTTATGAGGGATCACTTGAATAGTGAGCAAGTTGAGATTATTGACATTTCTCCA
ATGGGGTGCCGTACAGGGTTTTATATGTCATTAATTGGTAGACCGAATGAGCAACAAGTCGTAACGGCTTGGCTTGCGGC
AATGAAAGATATTCTACAAGTGCAAAATCAAAATGATATTCCTGAATTAAATGAATACCAATGTGGCACTTATACAGAGC
ATTCCTTAGATGAAGCTCATCAGATTGCACGCAATATTCTTGCTCGTGGTGTTGGTGTGAATAGAAATGACGATTTATTG
TTAGATGAGCGTTTGCTTGCACAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EQV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.494

98.81

0.726