Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LNL76_RS04770 Genome accession   NZ_CP095161
Coordinates   978480..979478 (-) Length   332 a.a.
NCBI ID   WP_110479897.1    Uniprot ID   A0AAE5TG77
Organism   Avibacterium paragallinarum strain ZJ-C     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 973480..984478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNL76_RS04755 ettA 973628..975298 (+) 1671 WP_110479900.1 energy-dependent translational throttle protein EttA -
  LNL76_RS04760 pepT 975606..976826 (-) 1221 WP_110479899.1 peptidase T -
  LNL76_RS04765 - 976845..978386 (-) 1542 WP_110479898.1 AbgT family transporter -
  LNL76_RS04770 cytR 978480..979478 (-) 999 WP_110479897.1 substrate-binding domain-containing protein Regulator
  LNL76_RS04775 rbsK 979518..980444 (-) 927 WP_110479896.1 ribokinase -
  LNL76_RS04780 - 980526..981791 (-) 1266 WP_035684956.1 NupC/NupG family nucleoside CNT transporter -
  LNL76_RS04785 - 982089..983024 (+) 936 WP_110479895.1 nucleoside hydrolase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37350.12 Da        Isoelectric Point: 7.7923

>NTDB_id=582658 LNL76_RS04770 WP_110479897.1 978480..979478(-) (cytR) [Avibacterium paragallinarum strain ZJ-C]
MATMKDIARIAQVSTSTVSHVINNTGYVSDAMRERIMKVVKELNYRPSVLARSLKIKQTKTLGMLVTATNNPFFAEVVSG
VEQYCNQHDYNLIISSLDGNEERLEQNIQTLIQKQVDGLLLMYSDSRHSFLKQLDVALPMVIMDWWPTALSADKIYENSE
LGAYLATKCLIEQGHKAIAIITGNLNKSLAQNRLQGYKKALNEHQLAIRDEWIIESHFDFEGGVEGMKKLLQAGKRPTAV
FACSDTIAVGVYQVAWQNGLRIPQDLSVIGYDDITLAQYLAPPLTTIHQPKAELGKLAVETLLERIKNPHKSEQSILLEP
KLIWRDSVQCRK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=582658 LNL76_RS04770 WP_110479897.1 978480..979478(-) (cytR) [Avibacterium paragallinarum strain ZJ-C]
ATGGCAACAATGAAAGATATTGCACGCATTGCACAGGTTTCAACCTCCACCGTGTCGCACGTGATTAATAATACGGGTTA
TGTAAGCGATGCAATGCGAGAACGCATAATGAAGGTTGTCAAAGAACTGAATTATCGCCCTTCCGTCTTGGCGAGAAGCC
TGAAAATCAAGCAAACCAAAACCTTGGGAATGTTGGTTACCGCAACCAACAACCCTTTTTTCGCGGAAGTGGTGAGTGGC
GTTGAGCAATATTGTAATCAGCACGATTATAATCTGATTATTTCAAGCCTAGATGGTAATGAGGAACGCTTAGAACAAAA
TATTCAAACGCTCATTCAAAAACAGGTGGACGGCTTGTTGTTAATGTATTCTGATAGCCGTCATTCCTTTCTTAAGCAAC
TTGATGTTGCCTTGCCAATGGTGATTATGGACTGGTGGCCAACGGCATTAAGTGCGGATAAAATTTATGAAAATTCTGAA
CTTGGTGCGTATCTTGCGACAAAATGCTTAATTGAGCAAGGGCATAAAGCGATTGCGATTATCACCGGAAATCTGAATAA
ATCCCTCGCACAAAATCGTTTGCAAGGCTATAAAAAAGCCTTAAACGAACATCAGTTAGCCATTCGTGATGAATGGATTA
TCGAAAGCCATTTTGATTTTGAAGGTGGCGTGGAAGGAATGAAAAAGCTGTTACAAGCGGGCAAACGGCCTACGGCTGTG
TTTGCGTGCAGCGACACGATTGCGGTAGGTGTTTATCAAGTGGCGTGGCAAAATGGTTTGCGTATTCCGCAAGATCTTTC
TGTGATTGGCTATGATGATATTACCCTTGCCCAATATCTCGCCCCACCGCTCACCACCATTCATCAACCTAAAGCCGAAT
TAGGCAAACTTGCGGTGGAAACGCTGTTAGAACGTATTAAAAACCCCCATAAAAGCGAACAATCTATTTTGCTAGAACCT
AAATTAATTTGGCGGGATTCTGTGCAGTGCAGAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAE5TG77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.298

99.096

0.38
  cytR Vibrio parahaemolyticus RIMD 2210633

37.805

98.795

0.373