Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KUF65_RS11425 Genome accession   NZ_CP077749
Coordinates   2487129..2488475 (-) Length   448 a.a.
NCBI ID   WP_024568384.1    Uniprot ID   X5K7C2
Organism   Elizabethkingia anophelis strain 090-MNO-R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2482129..2493475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUF65_RS11395 (KUF65_11380) - 2482298..2482810 (+) 513 WP_024564627.1 DUF6702 family protein -
  KUF65_RS11400 (KUF65_11385) - 2482807..2483382 (-) 576 WP_024568379.1 ACP phosphodiesterase -
  KUF65_RS11405 (KUF65_11390) - 2483527..2484519 (-) 993 WP_238557169.1 NAD-dependent epimerase/dehydratase family protein -
  KUF65_RS11410 (KUF65_11395) - 2484516..2485349 (-) 834 WP_034848520.1 SDR family oxidoreductase -
  KUF65_RS11415 (KUF65_11400) - 2485734..2486438 (-) 705 WP_102793257.1 VanW family protein -
  KUF65_RS11420 (KUF65_11405) - 2486445..2487125 (-) 681 WP_238557170.1 class I SAM-dependent methyltransferase -
  KUF65_RS11425 (KUF65_11410) radA 2487129..2488475 (-) 1347 WP_024568384.1 DNA repair protein RadA Machinery gene
  KUF65_RS11430 (KUF65_11415) - 2488692..2490311 (+) 1620 WP_009084926.1 CTP synthase -
  KUF65_RS11435 (KUF65_11420) yidC 2490320..2492101 (+) 1782 WP_035590393.1 membrane protein insertase YidC -
  KUF65_RS11440 (KUF65_11425) - 2492157..2492294 (-) 138 WP_058877472.1 hypothetical protein -
  KUF65_RS11445 (KUF65_11430) - 2492365..2492943 (-) 579 WP_238557171.1 ribonuclease HII -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49845.33 Da        Isoelectric Point: 6.7597

>NTDB_id=582653 KUF65_RS11425 WP_024568384.1 2487129..2488475(-) (radA) [Elizabethkingia anophelis strain 090-MNO-R]
MAKVKTAYYCQNCGTQYPQWHGQCKNCGEWNTLVEEVIEKSTSKNYSGEKKQHIINIIEVNAQEEPRITTPSDELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMRKRVLYVSGEESASQIKMRADRLTDLQNPECFLFTETSVDKILHEAKKLQ
PQFMILDSIQTLHSSLIESSPGTVSQIRECSSEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRSC
TGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEKYCFAGEIGLSGEIRPVP
QIEHRITEAEKLGYDKIYVSNLNKIPKRKFAIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=582653 KUF65_RS11425 WP_024568384.1 2487129..2488475(-) (radA) [Elizabethkingia anophelis strain 090-MNO-R]
GTGGCAAAGGTCAAAACGGCATATTACTGTCAAAATTGCGGAACTCAGTATCCGCAGTGGCACGGACAGTGCAAAAATTG
TGGAGAATGGAATACTTTGGTTGAAGAAGTTATAGAAAAATCGACTTCAAAAAATTATTCCGGAGAAAAGAAGCAACATA
TTATTAACATTATCGAGGTCAACGCCCAGGAAGAACCAAGAATTACAACCCCGAGCGATGAGCTGAACCGTGTATTGGGA
GGTGGGATCGTACTAGGTTCTGTTACCTTAATTGGTGGTGAACCGGGAATCGGGAAGTCTACCCTTTTGCTTCAGCTGGC
ACTAAAAATGCGCAAACGTGTTTTGTATGTCTCCGGAGAAGAAAGTGCTTCACAAATTAAAATGCGTGCTGATCGCCTTA
CCGATCTCCAAAATCCGGAGTGCTTCCTTTTTACAGAAACTTCTGTGGACAAGATTCTGCATGAAGCGAAAAAGCTTCAG
CCTCAGTTTATGATTCTGGACTCTATACAGACATTGCATTCCAGCCTTATAGAAAGCTCACCGGGCACAGTTTCTCAGAT
TCGGGAATGTTCTTCAGAAATTATAAAGTTTGCTAAAGAAACCAATACTCCTGTGTTTCTGGTAGGCCATATCACCAAAG
ACGGACAAATTGCCGGTCCGAAAGTTCTGGAACATATGGTGGATGTGGTTCTAAATTTCGATGGCGACAGAAATCACCTT
TTCAGGTTGCTAAGAGCTAATAAAAACCGTTTTGGCTCTACTTCCGAAATTGGTATTTATGAAATGATATCACAGGGCCT
GAAAGAAATTAAAAATCCTTCTGAAATACTGATTACCAAAAAATTTGAAGAGCTATCCGGCAATTCTGTAGCTGTAACCC
TGGAAGGAAACCGCCCAATGCTACTGGAAATTCAGGCTTTGGTAAGTACCGCAGTATATGGTACTCCACAGAGAAGCTGC
ACAGGTTTCGATGCAAAAAGGCTTAATATGCTTCTGGCAGTTCTGGAAAAACGAGCAGGCTTCCAGCTTGGATCAAAAGA
TGTATTCCTGAATATAACCGGCGGCATCAAAACTGACGATCCAGCACTGGATTTAGCAGTTGTAGCCTCTATTCTGTCTT
CCAATGAAGATATTGCTATTTCCGAGAAGTATTGCTTCGCTGGAGAAATAGGTCTTAGCGGAGAAATACGACCTGTTCCT
CAGATTGAACACCGTATCACAGAGGCCGAAAAACTGGGATATGATAAAATCTACGTTTCCAATCTGAATAAAATACCCAA
AAGGAAATTTGCGATAAAGATTGAAGAAGTCAGCAAAATCGAAGATTTTCATGAAAGACTATTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5K7C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.578

100

0.496
  radA Streptococcus pneumoniae Rx1

48.578

100

0.496
  radA Streptococcus pneumoniae R6

48.578

100

0.496
  radA Streptococcus pneumoniae TIGR4

48.578

100

0.496
  radA Streptococcus mitis NCTC 12261

48.571

100

0.493
  radA Streptococcus mitis SK321

48.352

100

0.491
  radA Bacillus subtilis subsp. subtilis str. 168

49.188

96.205

0.473