Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MU410_RS08940 Genome accession   NZ_CP095155
Coordinates   1862013..1863440 (-) Length   475 a.a.
NCBI ID   WP_000980615.1    Uniprot ID   -
Organism   Escherichia coli strain Iso00041     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1857013..1868440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU410_RS08910 yeeZ 1857068..1857892 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  MU410_RS08915 yeeY 1857938..1858867 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  MU410_RS08920 yoeI 1859082..1859144 (+) 63 WP_010723108.1 membrane protein YoeI -
  MU410_RS08925 plaP 1859134..1860492 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MU410_RS08930 tsuA 1860671..1861729 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  MU410_RS08935 tsuB 1861743..1861970 (+) 228 WP_000985272.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MU410_RS08940 sbcB 1862013..1863440 (-) 1428 WP_000980615.1 exodeoxyribonuclease I Machinery gene
  MU410_RS08945 dacD 1863649..1864815 (+) 1167 WP_001352246.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MU410_RS08950 sbmC 1864934..1865407 (+) 474 WP_174490792.1 DNA gyrase inhibitor SbmC -
  MU410_RS08955 yeeA 1865606..1866664 (+) 1059 WP_001200892.1 FUSC family protein -
  MU410_RS08960 tmaR 1866836..1867165 (+) 330 WP_000450409.1 DUF496 family protein -
  MU410_RS08965 - 1867266..1867631 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  MU410_RS08970 - 1867902..1868291 (-) 390 WP_174490791.1 transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54444.71 Da        Isoelectric Point: 5.4700

>NTDB_id=582597 MU410_RS08940 WP_000980615.1 1862013..1863440(-) (sbcB) [Escherichia coli strain Iso00041]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=582597 MU410_RS08940 WP_000980615.1 1862013..1863440(-) (sbcB) [Escherichia coli strain Iso00041]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583