Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MU414_RS17725 Genome accession   NZ_CP095137
Coordinates   3608429..3609034 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain Iso00225     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3603429..3614034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU414_RS17705 aes 3603570..3604529 (+) 960 WP_000801794.1 acetyl esterase -
  MU414_RS17710 hemH 3604526..3605488 (-) 963 WP_001250114.1 ferrochelatase -
  MU414_RS17715 adk 3605620..3606264 (-) 645 WP_001220233.1 adenylate kinase -
  MU414_RS17720 htpG 3606445..3608319 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  MU414_RS17725 recR 3608429..3609034 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  MU414_RS17730 ybaB 3609034..3609363 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  MU414_RS17735 dnaX 3609416..3611347 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  MU414_RS17740 apt 3611476..3612027 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  MU414_RS17745 ybaN 3612180..3612557 (-) 378 WP_001188900.1 DUF454 family protein -
  MU414_RS17750 priC 3612627..3613154 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  MU414_RS17755 rsmS 3613168..3613332 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=582532 MU414_RS17725 WP_001195025.1 3608429..3609034(-) (recR) [Escherichia coli strain Iso00225]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=582532 MU414_RS17725 WP_001195025.1 3608429..3609034(-) (recR) [Escherichia coli strain Iso00225]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443