Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MU416_RS16310 Genome accession   NZ_CP095125
Coordinates   3398869..3399474 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain Iso00270     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3393869..3404474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU416_RS16290 aes 3393906..3394865 (+) 960 WP_000801813.1 acetyl esterase -
  MU416_RS16295 hemH 3394862..3395824 (-) 963 WP_001250103.1 ferrochelatase -
  MU416_RS16300 adk 3396060..3396704 (-) 645 WP_001220233.1 adenylate kinase -
  MU416_RS16305 htpG 3396885..3398759 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  MU416_RS16310 recR 3398869..3399474 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  MU416_RS16315 ybaB 3399474..3399803 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  MU416_RS16320 dnaX 3399856..3401787 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  MU416_RS16325 apt 3401916..3402467 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  MU416_RS16330 ybaN 3402620..3402997 (-) 378 WP_001188905.1 DUF454 family protein -
  MU416_RS16335 priC 3403067..3403594 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  MU416_RS16340 rsmS 3403608..3403769 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=582449 MU416_RS16310 WP_001195025.1 3398869..3399474(-) (recR) [Escherichia coli strain Iso00270]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=582449 MU416_RS16310 WP_001195025.1 3398869..3399474(-) (recR) [Escherichia coli strain Iso00270]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443