Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RVR_RS16585 Genome accession   NZ_AP018365
Coordinates   3963046..3963645 (-) Length   199 a.a.
NCBI ID   WP_202234599.1    Uniprot ID   A0A7U3UTH9
Organism   Streptomyces sp. SN-593     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3958046..3968645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - recR 3963046..3963645 (-) 600 - - Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21710.99 Da        Isoelectric Point: 5.4072

>NTDB_id=58242 RVR_RS16585 WP_202234599.1 3963046..3963645(-) (recR) [Streptomyces sp. SN-593]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQADPADVRRLAHALSEVKAKVRFCAVCGNVAQEERCRVCSDPRRDPAV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=58242 RVR_RS16585 WP_202234599.1 3963046..3963645(-) (recR) [Streptomyces sp. SN-593]
GTGTACGAAGGCGTGGTGCAGGACCTGATCGACGAGCTGGGCAGGCTGCCTGGCGTGGGTCCCAAGAGTGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGACCCGGCCGACGTGCGCCGCCTGGCGCACGCGCTGTCCGAGGTGAAGGCGAAGGTGC
GGTTCTGCGCGGTGTGCGGGAACGTCGCGCAGGAGGAGCGGTGCCGGGTGTGCAGTGACCCGCGGCGCGACCCGGCGGTG
ATCTGCGTGGTCGAGGAGCCCAAGGACGTGGTGGCGGTCGAGCGCACCCGGGAGTTCCGCGGGCGGTACCACGTGCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGGATACGGGAACTGCTCGCCCGCCTCGCCGACGGCA
CCGTCACCGAGCTGATCCTGGCCACCGACCCGAACCTCGAGGGCGAGGCGACGGCGACGTATCTGGCCCGCATGGTGAAA
CCCATGGGTTTGCGCGTCACGAGACTGGCCAGTGGGCTTCCTGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACGCT
GGGGCGGGCCTTCGAAGGAAGGCGGTTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3UTH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447

Multiple sequence alignment