Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   MUA78_RS02010 Genome accession   NZ_CP095116
Coordinates   432366..432779 (+) Length   137 a.a.
NCBI ID   WP_045178630.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 427366..437779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA78_RS01970 (MUA78_01970) - 427649..428290 (+) 642 WP_262515321.1 pathogenicity island protein -
  MUA78_RS01975 (MUA78_01975) - 428998..429342 (+) 345 WP_001288441.1 hypothetical protein -
  MUA78_RS01980 (MUA78_01980) - 429377..429955 (+) 579 WP_031769358.1 hypothetical protein -
  MUA78_RS01985 (MUA78_01985) - 429955..430131 (+) 177 WP_001160678.1 hypothetical protein -
  MUA78_RS01990 (MUA78_01990) - 430184..430711 (+) 528 WP_262515322.1 spore coat protein -
  MUA78_RS01995 (MUA78_01995) - 430843..431055 (+) 213 WP_262515478.1 helix-turn-helix domain-containing protein -
  MUA78_RS02000 (MUA78_02000) - 431052..431621 (+) 570 WP_262515323.1 terminase small subunit -
  MUA78_RS02005 (MUA78_02005) - 431856..432263 (-) 408 WP_045178629.1 alkylhydroperoxidase -
  MUA78_RS02010 (MUA78_02010) lrpC 432366..432779 (+) 414 WP_045178630.1 Lrp/AsnC family transcriptional regulator Machinery gene
  MUA78_RS02015 (MUA78_02015) - 433501..434508 (-) 1008 WP_001080631.1 Abi family protein -
  MUA78_RS02020 (MUA78_02020) - 434514..435185 (-) 672 Protein_403 tyrosine-type recombinase/integrase -
  MUA78_RS02025 (MUA78_02025) selX 435426..436037 (+) 612 WP_000475322.1 staphylococcal enterotoxin-like toxin X -
  MUA78_RS02030 (MUA78_02030) - 436406..436774 (+) 369 WP_000849165.1 YxeA family protein -
  MUA78_RS02035 (MUA78_02035) - 436955..437527 (+) 573 WP_000769722.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 16202.63 Da        Isoelectric Point: 6.3646

>NTDB_id=582312 MUA78_RS02010 WP_045178630.1 432366..432779(+) (lrpC) [Staphylococcus aureus strain IVB6156]
MDDLINRKIIDTLLNNSRIPINELSKEVNLSAPAVRERLNKLEERGIIKDYTINIDYKKLGYDVEIFIELTIKNNRYKDF
KYFISKQDNVEFCYRVSGEACFVFKVWLENMNAAETFVDNLQSYGYTKCQFIFSKVV

Nucleotide


Download         Length: 414 bp        

>NTDB_id=582312 MUA78_RS02010 WP_045178630.1 432366..432779(+) (lrpC) [Staphylococcus aureus strain IVB6156]
ATGGATGACTTAATAAATAGAAAAATAATCGATACTTTGCTAAATAACAGTAGAATTCCTATTAATGAATTAAGTAAGGA
AGTGAATTTATCGGCTCCAGCTGTAAGAGAAAGGTTAAATAAACTTGAAGAAAGAGGTATTATTAAAGATTACACAATAA
ACATTGATTACAAAAAATTAGGATATGATGTAGAAATATTTATAGAGTTAACTATTAAAAATAATCGATACAAAGATTTT
AAATATTTTATATCCAAGCAGGATAATGTAGAATTTTGCTATCGAGTATCTGGAGAAGCGTGTTTTGTATTTAAGGTTTG
GTTGGAGAATATGAATGCAGCGGAAACGTTTGTAGATAATTTACAATCATATGGTTATACAAAATGTCAGTTTATTTTTT
CGAAAGTTGTTTGA

Domains

Predicted by InterProScan.

Winged helix-turn-helix DNA-binding (HTH_24)

(3-49)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

41.791

97.81

0.409