Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   VB13_RS08820 Genome accession   NZ_CP077685
Coordinates   54230..54325 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M49 591     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49230..59325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB13_RS00315 (VB13_00330) - 50159..51640 (+) 1482 WP_009880316.1 PIN-like domain-containing protein -
  VB13_RS00320 (VB13_00335) purB 51813..53105 (+) 1293 WP_009880315.1 adenylosuccinate lyase -
  VB13_RS00325 (VB13_00340) rgg4 53236..54146 (+) 911 Protein_31 transcriptional regulator Rgg4/ComR -
  VB13_RS08820 (VB13_00350) comS 54230..54325 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  VB13_RS00335 (VB13_00355) ruvB 54372..55370 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  VB13_RS00340 (VB13_00360) - 55508..55945 (+) 438 WP_012560368.1 low molecular weight protein-tyrosine-phosphatase -
  VB13_RS00345 (VB13_00365) - 55968..56369 (+) 402 WP_012560369.1 MORN repeat-containing protein -
  VB13_RS00350 (VB13_00370) - 56366..58141 (+) 1776 WP_009880312.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=582262 VB13_RS08820 WP_198462994.1 54230..54325(+) (comS) [Streptococcus pyogenes strain M49 591]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=582262 VB13_RS08820 WP_198462994.1 54230..54325(+) (comS) [Streptococcus pyogenes strain M49 591]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452