Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   VB13_RS01410 Genome accession   NZ_CP077685
Coordinates   265318..266241 (+) Length   307 a.a.
NCBI ID   WP_219050309.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M49 591     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260318..271241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB13_RS01395 (VB13_01450) amiC 261818..263320 (+) 1503 WP_009880667.1 ABC transporter permease Regulator
  VB13_RS01400 (VB13_01455) amiD 263320..264246 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  VB13_RS01405 (VB13_01460) amiE 264255..265325 (+) 1071 WP_009880666.1 ABC transporter ATP-binding protein Regulator
  VB13_RS01410 (VB13_01465) amiF 265318..266241 (+) 924 WP_219050309.1 ATP-binding cassette domain-containing protein Regulator
  VB13_RS08825 - 266496..266815 (-) 320 Protein_231 IS3 family transposase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34687.85 Da        Isoelectric Point: 6.5113

>NTDB_id=582226 VB13_RS01410 WP_219050309.1 265318..266241(+) (amiF) [Streptococcus pyogenes strain M49 591]
MSEKLVEVKDLEISFGEGKKKFAAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=582226 VB13_RS01410 WP_219050309.1 265318..266241(+) (amiF) [Streptococcus pyogenes strain M49 591]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGCTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAATCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAATCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGGATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAACCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTTTTAAACCTTCTCAAACGGATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGTCAAAAAGAACT
TGTTGTCTATCATCCAGACCAACATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.026

99.674

0.818
  amiF Streptococcus thermophilus LMD-9

81.699

99.674

0.814
  amiF Streptococcus salivarius strain HSISS4

81.699

99.674

0.814