Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   KTT68_RS17600 Genome accession   NZ_CP077672
Coordinates   3583624..3584769 (+) Length   381 a.a.
NCBI ID   WP_224223888.1    Uniprot ID   -
Organism   Bacillus velezensis strain SWUJ1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3578624..3589769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTT68_RS17580 - 3579525..3579953 (-) 429 WP_032869448.1 DUF1934 domain-containing protein -
  KTT68_RS17585 - 3580107..3580615 (+) 509 Protein_3413 bacteriocin biosynthesis protein AlbG -
  KTT68_RS17590 - 3580622..3581998 (-) 1377 WP_224223886.1 YncE family protein -
  KTT68_RS17595 - 3582038..3583393 (-) 1356 WP_224223887.1 YncE family protein -
  KTT68_RS17600 rapF 3583624..3584769 (+) 1146 WP_224223888.1 tetratricopeptide repeat protein Regulator
  KTT68_RS17605 - 3584753..3584872 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  KTT68_RS17610 - 3585070..3585273 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  KTT68_RS17615 - 3585287..3585490 (+) 204 WP_007407641.1 hypothetical protein -
  KTT68_RS17620 - 3585525..3585710 (+) 186 WP_029972879.1 DUF4177 domain-containing protein -
  KTT68_RS17625 - 3585896..3586177 (+) 282 WP_007407643.1 hypothetical protein -
  KTT68_RS17630 - 3586221..3586733 (+) 513 WP_224223889.1 stage II sporulation protein M -
  KTT68_RS17635 - 3587324..3587542 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  KTT68_RS17640 speB 3587711..3588583 (-) 873 WP_007614448.1 agmatinase -
  KTT68_RS17645 speE 3588642..3589472 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45513.50 Da        Isoelectric Point: 4.5407

>NTDB_id=582108 KTT68_RS17600 WP_224223888.1 3583624..3584769(+) (rapF) [Bacillus velezensis strain SWUJ1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYFSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDNGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=582108 KTT68_RS17600 WP_224223888.1 3583624..3584769(+) (rapF) [Bacillus velezensis strain SWUJ1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTTTT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAATGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

77.953

100

0.78
  rapC Bacillus subtilis subsp. subtilis str. 168

56.316

99.738

0.562