Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KTT68_RS07125 Genome accession   NZ_CP077672
Coordinates   1372579..1372863 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain SWUJ1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1367579..1377863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTT68_RS07105 - 1368819..1369727 (+) 909 WP_032874760.1 ketopantoate reductase family protein -
  KTT68_RS07110 - 1369761..1370993 (-) 1233 WP_045207302.1 aminopeptidase -
  KTT68_RS07115 - 1371094..1371228 (-) 135 WP_013352107.1 protein YkpC -
  KTT68_RS07120 mreBH 1371300..1372307 (-) 1008 WP_038460721.1 cell shape-determining protein MreBH -
  KTT68_RS07125 abrB 1372579..1372863 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KTT68_RS07130 - 1373036..1374340 (+) 1305 WP_032874761.1 ATP-binding protein -
  KTT68_RS07135 - 1374342..1375169 (+) 828 WP_044801364.1 gamma-glutamylcyclotransferase -
  KTT68_RS07140 ktrC 1375210..1375875 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  KTT68_RS07145 ade 1376024..1377757 (+) 1734 WP_224224226.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=582070 KTT68_RS07125 WP_003154557.1 1372579..1372863(+) (abrB) [Bacillus velezensis strain SWUJ1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=582070 KTT68_RS07125 WP_003154557.1 1372579..1372863(+) (abrB) [Bacillus velezensis strain SWUJ1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATCTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543