Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   SPN034183_RS09950 Genome accession   NC_021028
Coordinates   1832170..1832583 (-) Length   137 a.a.
NCBI ID   WP_000265624.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN034183     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1827170..1837583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034183_RS09920 (SPN034183_18020) - 1827865..1828689 (-) 825 WP_001809383.1 membrane protein insertase YidC -
  SPN034183_RS09925 (SPN034183_18030) rnpA 1828664..1829035 (-) 372 WP_000739244.1 ribonuclease P protein component -
  SPN034183_RS13355 - 1829052..1829183 (-) 132 WP_000768904.1 hypothetical protein -
  SPN034183_RS09930 (SPN034183_18040) - 1829184..1830374 (-) 1191 WP_000167765.1 acetate kinase -
  SPN034183_RS09935 (SPN034183_18050) comYH 1830425..1831378 (-) 954 WP_000345099.1 class I SAM-dependent methyltransferase Machinery gene
  SPN034183_RS12025 (SPN034183_18060) - 1831439..1832033 (-) 595 Protein_1877 methyltransferase domain-containing protein -
  SPN034183_RS09950 (SPN034183_18070) comGG/cglG 1832170..1832583 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPN034183_RS09955 (SPN034183_18080) comGF/cglF 1832561..1833022 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPN034183_RS09960 (SPN034183_18090) comGE/cglE 1832985..1833287 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPN034183_RS09965 (SPN034183_18100) comGD/cglD 1833250..1833654 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPN034183_RS09970 (SPN034183_18110) comGC/cglC 1833647..1833973 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  SPN034183_RS09975 (SPN034183_18120) comGB/cglB 1833975..1834991 (-) 1017 WP_078160205.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPN034183_RS09980 (SPN034183_18130) comGA/cglA/cilD 1834939..1835880 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  SPN034183_RS09985 (SPN034183_18140) - 1835956..1836321 (-) 366 WP_000286415.1 DUF1033 family protein -
  SPN034183_RS09990 (SPN034183_18150) - 1836472..1837530 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15955.42 Da        Isoelectric Point: 10.2472

>NTDB_id=58203 SPN034183_RS09950 WP_000265624.1 1832170..1832583(-) (comGG/cglG) [Streptococcus pneumoniae SPN034183]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=58203 SPN034183_RS09950 WP_000265624.1 1832170..1832583(-) (comGG/cglG) [Streptococcus pneumoniae SPN034183]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae D39

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae R6

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae TIGR4

99.27

100

0.993

  comGG/cglG Streptococcus mitis SK321

87.591

100

0.876

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comYG Streptococcus mutans UA140

38.806

97.81

0.38

  comYG Streptococcus mutans UA159

38.806

97.81

0.38


Multiple sequence alignment