Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MP619_RS09405 Genome accession   NZ_CP095081
Coordinates   1876226..1878211 (-) Length   661 a.a.
NCBI ID   WP_129556151.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1871226..1883211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS09380 (MP619_09350) - 1871237..1872487 (-) 1251 WP_129556147.1 glutamate-5-semialdehyde dehydrogenase -
  MP619_RS09385 (MP619_09355) proB 1872480..1873301 (-) 822 WP_129556148.1 glutamate 5-kinase -
  MP619_RS09390 (MP619_09360) - 1873366..1874994 (-) 1629 WP_129556149.1 ABC transporter permease -
  MP619_RS09395 (MP619_09365) - 1874999..1875733 (-) 735 WP_129556150.1 ABC transporter ATP-binding protein -
  MP619_RS09400 (MP619_09370) - 1875787..1876032 (-) 246 WP_231112744.1 bacteriocin immunity protein -
  MP619_RS09405 (MP619_09375) recP/tkt 1876226..1878211 (-) 1986 WP_129556151.1 transketolase Machinery gene
  MP619_RS09410 (MP619_09380) fsa 1878428..1879072 (-) 645 WP_002983569.1 fructose-6-phosphate aldolase -
  MP619_RS09415 (MP619_09385) - 1879194..1880705 (-) 1512 WP_129556152.1 helix-turn-helix domain-containing protein -
  MP619_RS09420 (MP619_09390) - 1880695..1882035 (-) 1341 WP_172596002.1 FAD/NAD(P)-binding oxidoreductase -
  MP619_RS09425 (MP619_09395) - 1882146..1882847 (-) 702 WP_003060745.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71338.08 Da        Isoelectric Point: 4.6481

>NTDB_id=581863 MP619_RS09405 WP_129556151.1 1876226..1878211(-) (recP/tkt) [Streptococcus dysgalactiae strain WJ001]
MTFDAIDQLAVNTVRTISMDAIQAANSGHPGLPMGAAPMAYVLWNHFMNINPKTSRNWSNRDRFILSAGHGSAMLYSLLH
LAGYDLSVEDLKNFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTFALNGDG
DLMEGVSQEAASMAGHLKLGKLVLLYDSNDISLDGPTSMSFTEDVKGRFEAYGWQHILVKDGNDLEEIAAAIEAAKAETE
KPTIIEVKTIIGFGAEKQGTSAVHGAPLGAEGIVFAKNAYKWTHQDFEVPTEVTERFAQGLQARGEKAEQAWNDLFAAYQ
AEYPELAAEYQKAFANEAAQVELEAHELGSSMASRVSSQQAIQQISEQVASFWGGSADLSASNNTMVKAETDFQPGHYEG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQSLPTVYVMTHDSIAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRAIAETDRPTMLVLTRQNLPVLEGTKELAEDGLNKGAYILSEAKGDLDGILIATGSEV
KLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPG
NRIFEEYGFTAANATELYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=581863 MP619_RS09405 WP_129556151.1 1876226..1878211(-) (recP/tkt) [Streptococcus dysgalactiae strain WJ001]
ATGACATTTGATGCAATTGACCAGTTGGCAGTAAATACTGTCCGCACCATATCAATGGATGCCATTCAAGCGGCAAATTC
TGGACACCCCGGCCTTCCAATGGGTGCAGCACCTATGGCCTACGTTCTTTGGAATCACTTCATGAACATTAATCCAAAAA
CAAGCCGTAATTGGTCAAACAGAGACCGTTTTATCCTATCAGCGGGACACGGAAGTGCTATGCTTTATAGCTTGTTACAC
TTAGCTGGTTATGATTTATCTGTAGAAGATTTAAAGAACTTCCGTCAATGGGGTTCTAAAACACCAGGTCACCCAGAAGT
TAATCATACCGATGGTGTGGAAGCAACTACAGGACCTCTTGGTCAAGGGATTGCGAATGCTGTTGGTATGGCCATGGCAG
AAGCTCATCTGGCAGCTAAATTTAACAAACCAGGCTTTGACATCGTTGATCACTACACATTTGCTTTGAATGGTGACGGT
GACCTTATGGAAGGTGTCAGTCAAGAAGCAGCAAGTATGGCAGGACACTTAAAACTTGGCAAATTGGTCTTGCTTTACGA
TTCAAACGACATCTCTCTTGATGGTCCAACCTCAATGTCCTTTACAGAAGATGTTAAAGGACGTTTCGAAGCTTACGGCT
GGCAACATATCCTTGTTAAAGACGGAAACGATTTAGAAGAAATTGCAGCCGCTATCGAAGCAGCTAAGGCTGAAACTGAG
AAACCAACCATCATCGAAGTCAAAACCATTATTGGTTTTGGTGCTGAAAAACAGGGCACATCAGCTGTTCATGGTGCTCC
TCTTGGGGCAGAAGGTATTGTTTTTGCTAAGAATGCTTACAAATGGACTCACCAAGACTTTGAAGTTCCTACTGAAGTGA
CTGAACGTTTTGCTCAAGGCCTTCAAGCACGTGGTGAAAAAGCAGAACAAGCCTGGAATGACTTGTTTGCAGCTTATCAA
GCAGAATATCCTGAATTGGCAGCAGAATACCAAAAAGCCTTTGCTAACGAAGCTGCTCAAGTAGAACTTGAAGCGCACGA
ACTTGGTAGCTCAATGGCGAGTCGTGTTTCTAGCCAACAAGCCATCCAACAAATCTCAGAACAAGTAGCCTCTTTCTGGG
GTGGGTCAGCAGACCTTTCAGCATCTAACAACACAATGGTGAAGGCTGAAACAGATTTCCAACCAGGTCATTATGAAGGC
CGTAACATCTGGTTTGGCGTTCGTGAATTTGCCATGGCAGCAGCTATGAATGGTATTGCCCTTCACGGTGGAACACGCGT
TTACGGCGGAACCTTCTTTGTCTTCTCAAACTATCTTCTTCCAGCTGTTCGTATGGCAGCCCTCCAAAGCTTACCAACAG
TTTATGTCATGACACATGATTCTATCGCTGTCGGTGAAGATGGGCCAACGCACGAACCAATTGAACAATTGGCAAGTGTT
CGTTCAATGCCTAACTTGAACGTTATTCGTCCAGCAGACGGTAACGAAACAAATGCTGCTTGGAAACGTGCCATTGCTGA
AACAGATCGCCCAACTATGCTTGTATTGACTCGTCAAAACCTTCCAGTGCTTGAGGGCACAAAAGAATTGGCAGAAGATG
GTCTTAACAAAGGAGCTTACATCTTGTCAGAAGCCAAAGGTGACCTTGACGGTATCTTGATTGCAACGGGTTCAGAAGTG
AAATTGGCAATGGATACTCAAGAAGCTCTTGAAGCAGAAGGCATTCATGTGCGTGTGGTGTCTATGCCATCACAAAATAT
CTTTGACGAACAGTCAGCAGAGTATAAAGAAAGCATTCTACCAGCAGCTGTGACTAAACGTCTCGCTATCGAAGCAGGTT
CAAGCTTTGGCTGGGCAAAATATGTTGGCCTAGCAGGAAAAACATTGACCATTGACACTTGGGGTGCTTCAGCTCCAGGA
AATCGTATCTTCGAAGAATATGGTTTCACTGCGGCAAATGCAACTGAGTTATACAAATCACTCTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.167

99.546

0.549