Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MP619_RS09295 Genome accession   NZ_CP095081
Coordinates   1852314..1852922 (+) Length   202 a.a.
NCBI ID   WP_129556135.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847314..1857922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS09265 (MP619_09235) - 1847580..1848062 (+) 483 WP_129556131.1 S-ribosylhomocysteine lyase -
  MP619_RS09270 (MP619_09240) - 1848176..1849657 (-) 1482 WP_129556132.1 cell division site-positioning protein MapZ family protein -
  MP619_RS09275 (MP619_09245) - 1849671..1850825 (-) 1155 WP_129556133.1 class I SAM-dependent RNA methyltransferase -
  MP619_RS09285 (MP619_09255) gpsB 1851270..1851596 (-) 327 WP_003052194.1 cell division regulator GpsB -
  MP619_RS09290 (MP619_09260) - 1851718..1852233 (-) 516 WP_129556134.1 DUF1273 domain-containing protein -
  MP619_RS09295 (MP619_09265) recU 1852314..1852922 (+) 609 WP_129556135.1 Holliday junction resolvase RecU Machinery gene
  MP619_RS09300 (MP619_09270) pbp1a 1852909..1855074 (+) 2166 WP_129556136.1 penicillin-binding protein PBP1A -
  MP619_RS09305 (MP619_09275) pepC 1855120..1856451 (-) 1332 WP_129556137.1 aminopeptidase C -
  MP619_RS09310 (MP619_09280) nadE 1856632..1857456 (-) 825 WP_003055492.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23350.97 Da        Isoelectric Point: 9.9487

>NTDB_id=581862 MP619_RS09295 WP_129556135.1 1852314..1852922(+) (recU) [Streptococcus dysgalactiae strain WJ001]
MVNYPHNLIRQKAPSVPKQSKQNKVDFANRGMSFEAAINATNEYYLSRQIAVIHKKPTPIQIVKVDYPKRSRAKIIEAYF
RQASTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMAAVVEQNGICFVLLHFSTLKETYYLPARALIAFYQID
KGNKSMPLDYIRKHGFKIVIGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=581862 MP619_RS09295 WP_129556135.1 1852314..1852922(+) (recU) [Streptococcus dysgalactiae strain WJ001]
ATGGTCAACTACCCTCATAATCTTATTCGACAAAAAGCACCTTCCGTGCCAAAGCAATCAAAACAAAATAAGGTAGATTT
TGCCAATCGAGGCATGTCTTTTGAAGCGGCTATCAACGCGACAAATGAGTATTATTTGTCGCGGCAAATTGCTGTTATTC
ATAAAAAACCTACCCCCATCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGTGCGAAAATCATTGAAGCGTACTTT
AGACAAGCTTCAACGACAGATTATTCTGGGGTTTACAAGGGGCATTATATTGATTTTGAGGCCAAGGAAACCAGACAAAA
AACAGCCATGCCTATGAAAAATTTTCATCTCCATCAGATTGAGCACATGGCAGCTGTTGTGGAACAAAATGGAATTTGCT
TTGTCTTACTTCACTTTTCAACACTGAAAGAAACCTACTATCTGCCTGCTCGGGCTCTTATTGCTTTTTATCAGATTGAT
AAGGGGAACAAATCAATGCCCCTCGATTATATCAGAAAACATGGCTTTAAGATAGTTATTGGAGCCTTTCCACAAGTCCC
TTATCTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5