Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KTN06_RS03620 Genome accession   NZ_CP077646
Coordinates   716181..716810 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ST866     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 711181..721810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTN06_RS03605 (KTN06_03605) helD 711423..713477 (-) 2055 WP_001297106.1 DNA helicase IV -
  KTN06_RS03610 (KTN06_03610) yccF 713600..714046 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KTN06_RS03615 (KTN06_03615) yccS 714056..716218 (+) 2163 WP_000875015.1 YccS family putative transporter -
  KTN06_RS03620 (KTN06_03620) sxy/tfoX 716181..716810 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KTN06_RS03625 (KTN06_03625) sulA 717029..717538 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KTN06_RS03630 (KTN06_03630) ompA 717895..718935 (+) 1041 WP_000750416.1 porin OmpA -
  KTN06_RS03635 (KTN06_03635) matP 719011..719463 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KTN06_RS03640 (KTN06_03640) ycbZ 719649..721409 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=581836 KTN06_RS03620 WP_000839153.1 716181..716810(-) (sxy/tfoX) [Escherichia coli strain ST866]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=581836 KTN06_RS03620 WP_000839153.1 716181..716810(-) (sxy/tfoX) [Escherichia coli strain ST866]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1