Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   KS242_RS12630 Genome accession   NZ_CP077639
Coordinates   2382135..2383085 (-) Length   316 a.a.
NCBI ID   WP_217321654.1    Uniprot ID   -
Organism   Terribacillus sp. DMT04     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2377135..2388085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KS242_RS12610 (KS242_12610) - 2377913..2378980 (+) 1068 WP_217321650.1 nitric oxide synthase oxygenase -
  KS242_RS12615 (KS242_12615) - 2379402..2380343 (-) 942 WP_217321651.1 siderophore ABC transporter substrate-binding protein -
  KS242_RS12620 (KS242_12620) - 2380440..2381195 (-) 756 WP_217321652.1 ABC transporter ATP-binding protein -
  KS242_RS12625 (KS242_12625) - 2381192..2382142 (-) 951 WP_217321653.1 iron chelate uptake ABC transporter family permease subunit -
  KS242_RS12630 (KS242_12630) ceuB 2382135..2383085 (-) 951 WP_217321654.1 ABC transporter permease Machinery gene
  KS242_RS12635 (KS242_12635) - 2383252..2383986 (+) 735 WP_217321655.1 YqcI/YcgG family protein -
  KS242_RS12640 (KS242_12640) tlp 2384043..2384276 (+) 234 WP_217321656.1 small acid-soluble spore protein Tlp -
  KS242_RS12645 (KS242_12645) - 2384313..2384927 (-) 615 WP_254391703.1 spore coat protein -
  KS242_RS12650 (KS242_12650) - 2384994..2385125 (-) 132 WP_084160843.1 YfhD family protein -
  KS242_RS12655 (KS242_12655) - 2385175..2385396 (-) 222 WP_217321658.1 alpha/beta-type small acid-soluble spore protein -
  KS242_RS12660 (KS242_12660) - 2385393..2385566 (-) 174 WP_217321659.1 hypothetical protein -
  KS242_RS12665 (KS242_12665) - 2385661..2386509 (-) 849 WP_217321660.1 undecaprenyl-diphosphate phosphatase -
  KS242_RS12670 (KS242_12670) - 2386522..2387142 (-) 621 WP_217321661.1 DedA family protein -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34705.02 Da        Isoelectric Point: 8.4432

>NTDB_id=581823 KS242_RS12630 WP_217321654.1 2382135..2383085(-) (ceuB) [Terribacillus sp. DMT04]
MKLMYLVIVTVLLAGCSLFVGVENVTFSALWNMEPEAWNIVIISRLPRMLSIIMAGVSLGICGLIMQQLTQNKFVSPTTA
GTMDWARLGILVSLLFFTDASPILKMCIAAAFALFGTLLFMGILQRLKQKDTIFIPLVGIMLGNVVSSIATFFALKFDLV
QNMSSWLQGDFSLIMEGRYELLYISVPLLVLAFLFANMFTVAGMGEDFATNLGLPYKYVVNIGLIIVAIITSVVILTVGT
IPFLGLIVPNIVSMYRGDHLKKSIWHTGVLGALFLLVCDIAGRIIIYPYEISVGLMVGVIGTGIFLYMLLRRNAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=581823 KS242_RS12630 WP_217321654.1 2382135..2383085(-) (ceuB) [Terribacillus sp. DMT04]
ATGAAGTTAATGTATTTAGTAATTGTTACTGTTCTATTAGCTGGTTGTTCCCTTTTTGTAGGTGTAGAAAACGTCACATT
TTCTGCACTTTGGAACATGGAACCAGAAGCCTGGAACATCGTTATAATCAGCCGGCTTCCCCGAATGCTAAGTATTATCA
TGGCGGGGGTAAGCTTGGGGATTTGTGGTTTGATTATGCAGCAGCTGACACAAAACAAATTTGTATCTCCTACAACAGCT
GGAACGATGGATTGGGCAAGATTAGGCATTCTTGTATCCTTGCTTTTCTTTACAGATGCAAGTCCAATTTTGAAGATGTG
CATCGCTGCTGCTTTTGCACTGTTCGGCACATTGCTGTTTATGGGAATTCTGCAAAGGCTGAAGCAAAAGGATACCATTT
TTATTCCCTTGGTCGGTATTATGCTCGGGAACGTAGTCAGTTCTATTGCCACGTTTTTTGCTCTTAAGTTTGACTTGGTA
CAGAACATGTCATCTTGGCTGCAAGGAGACTTTTCCTTGATTATGGAAGGGCGCTATGAATTGCTATACATAAGTGTTCC
GCTTCTCGTTCTTGCATTCTTATTCGCTAACATGTTCACTGTCGCGGGTATGGGTGAAGACTTTGCTACCAATTTAGGGC
TGCCTTACAAGTATGTGGTAAATATAGGATTGATTATTGTGGCAATTATTACATCAGTAGTCATCCTGACTGTGGGTACC
ATTCCGTTTCTCGGATTGATTGTACCGAATATCGTCAGCATGTACCGCGGTGATCATTTGAAAAAGAGCATTTGGCATAC
TGGGGTTCTCGGGGCGTTATTCTTACTCGTATGTGATATTGCAGGGCGGATCATTATCTACCCATACGAAATTTCAGTTG
GATTAATGGTAGGGGTCATCGGAACGGGTATCTTCCTTTATATGCTATTAAGGAGGAACGCCTATGCTTAA

Domains


Predicted by InterproScan.

(11-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52

94.937

0.494