Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KS242_RS10040 Genome accession   NZ_CP077639
Coordinates   1897538..1899262 (-) Length   574 a.a.
NCBI ID   WP_217321241.1    Uniprot ID   -
Organism   Terribacillus sp. DMT04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1892538..1904262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KS242_RS10025 (KS242_10025) - 1893724..1894362 (+) 639 WP_217321238.1 DUF1349 domain-containing protein -
  KS242_RS10030 (KS242_10030) spo0A 1895083..1895874 (-) 792 WP_217321239.1 sporulation transcription factor Spo0A -
  KS242_RS10035 (KS242_10035) spoIVB 1896117..1897382 (-) 1266 WP_217321240.1 SpoIVB peptidase -
  KS242_RS10040 (KS242_10040) recN 1897538..1899262 (-) 1725 WP_217321241.1 DNA repair protein RecN Machinery gene
  KS242_RS10045 (KS242_10045) ahrC 1899287..1899736 (-) 450 WP_097041361.1 transcriptional regulator AhrC/ArgR -
  KS242_RS10050 (KS242_10050) - 1899729..1900589 (-) 861 WP_217321242.1 TlyA family RNA methyltransferase -
  KS242_RS10055 (KS242_10055) dxs 1900594..1902489 (-) 1896 WP_217321243.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KS242_RS10060 (KS242_10060) - 1902781..1903668 (-) 888 WP_254391683.1 polyprenyl synthetase family protein -
  KS242_RS10065 (KS242_10065) - 1903669..1903902 (-) 234 WP_077308763.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64689.08 Da        Isoelectric Point: 5.0714

>NTDB_id=581817 KS242_RS10040 WP_217321241.1 1897538..1899262(-) (recN) [Terribacillus sp. DMT04]
MLTELSIKDFAIIDHIRIHFKEGLTVLTGETGAGKSIVIDAVQLLSGGRGSVEFIRHGQKKAELEGLFIIDSENHPIYAV
GAQFGVDIDDGMIVLERTMTASGKSICRVNGKLVTLAILREFGKSLIDIHTQHETQSLMDADRHIELLDLYNAEAIGKAK
EAYSLQFKELQKLKKRFKEWNTNEQEMAQRQDLLQFQYNELKEAALQPGEDDQLTEERTKLMNYERIYQALHDSYNALYG
EQKGLDWVGHALASLESASAYDEEIQKHHQSVSEQYYMLEDLTFQLSSQLDSLSYNPERLNEIEMRLNEINRLKKKYGSS
VEEILEYASRIEEEIDQIQNRDSHVHQLEQQITEMSEDALLEAKQLHDLRVQAASQLTEAIHEELKDLYLEKARFHVHVK
MKSGSAGDPEMDGKPVQLTADGFDSIVFHISTNPGEPLKELHKVASGGELSRIMLALKRIFSRHQGVTSVIFDEVDTGVS
GRVAQAIGEKIYGISVGSQVLCITHLPQVASMADSHLLIEKHVENNSTHTSVTELVQDAAVEEISRMMTGTVLTEKTKEH
AKELITLAGQFKHS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=581817 KS242_RS10040 WP_217321241.1 1897538..1899262(-) (recN) [Terribacillus sp. DMT04]
ATGCTTACAGAGCTTTCCATTAAGGATTTTGCGATTATTGATCACATCCGAATCCATTTTAAGGAAGGACTTACAGTGCT
GACTGGGGAAACCGGAGCAGGTAAGTCTATTGTCATTGATGCCGTTCAGCTGTTAAGCGGCGGTAGAGGTTCCGTTGAGT
TTATCCGTCATGGTCAGAAGAAAGCCGAACTGGAAGGTCTTTTTATTATTGATTCCGAGAACCATCCCATTTATGCTGTA
GGCGCTCAATTTGGTGTCGACATTGATGATGGAATGATTGTGCTGGAAAGAACCATGACTGCGAGTGGAAAAAGTATTTG
CCGTGTAAATGGCAAGCTTGTGACGTTGGCAATTTTGCGTGAGTTTGGAAAATCATTAATCGATATTCATACCCAGCATG
AAACGCAGTCACTAATGGATGCTGACAGACATATTGAATTGCTTGATTTATACAATGCTGAGGCAATTGGCAAAGCGAAG
GAAGCGTATTCGCTTCAATTCAAAGAACTTCAAAAATTGAAAAAACGTTTTAAAGAATGGAATACAAATGAACAGGAAAT
GGCACAGCGTCAAGACTTGCTTCAGTTTCAATACAATGAATTGAAAGAGGCTGCGCTTCAGCCTGGTGAAGACGATCAGC
TTACTGAAGAGCGGACAAAACTGATGAATTATGAACGCATCTATCAAGCACTCCATGATTCGTATAATGCACTCTACGGC
GAACAAAAGGGATTAGATTGGGTAGGACACGCTTTAGCAAGCTTAGAATCAGCAAGCGCCTATGATGAAGAGATTCAGAA
GCATCATCAGTCAGTTAGTGAGCAGTATTATATGCTCGAGGACTTAACATTCCAACTGAGCAGTCAGCTCGACAGTTTGT
CTTACAACCCAGAGCGATTGAACGAGATTGAAATGCGATTGAATGAAATTAACCGATTGAAGAAGAAGTACGGTTCTTCC
GTAGAGGAGATTTTAGAATACGCATCTCGTATTGAAGAAGAAATTGATCAAATTCAAAATCGTGATTCACATGTGCATCA
GCTGGAGCAGCAGATTACCGAGATGAGTGAGGATGCCTTGCTTGAAGCAAAGCAGCTGCATGACTTGCGTGTGCAAGCAG
CTTCGCAATTAACGGAGGCAATTCATGAAGAGCTAAAGGATTTGTATCTTGAAAAAGCACGCTTTCATGTACATGTAAAG
ATGAAATCAGGCTCAGCCGGTGATCCGGAAATGGACGGCAAACCTGTTCAATTGACGGCGGATGGTTTTGACTCAATTGT
CTTCCACATATCCACTAACCCTGGAGAACCTCTAAAAGAACTGCACAAAGTCGCCTCGGGCGGAGAATTATCGCGAATCA
TGCTTGCGCTGAAGCGAATTTTCTCTCGCCATCAAGGTGTAACAAGTGTCATTTTTGATGAAGTTGACACTGGTGTAAGC
GGAAGAGTCGCACAAGCAATTGGCGAGAAGATATACGGCATTTCTGTCGGTTCTCAAGTGCTTTGTATTACGCATTTGCC
GCAAGTGGCTTCTATGGCTGATTCTCATTTGCTAATTGAAAAGCATGTAGAAAATAATAGTACGCATACATCTGTAACAG
AACTCGTACAGGATGCGGCTGTTGAGGAAATCAGCAGAATGATGACAGGAACGGTACTGACAGAGAAAACAAAAGAACAT
GCGAAAGAACTGATTACGCTAGCCGGTCAATTCAAACATTCCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.401

100

0.554