Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D8S83_RS08310 Genome accession   NZ_AP018349
Coordinates   1677017..1678696 (-) Length   559 a.a.
NCBI ID   WP_000942203.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1672017..1683696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S83_RS08290 - 1672167..1673441 (-) 1275 WP_064133452.1 dihydrolipoamide acetyltransferase family protein -
  D8S83_RS08295 - 1673454..1674437 (-) 984 WP_001096636.1 alpha-ketoacid dehydrogenase subunit beta -
  D8S83_RS08300 - 1674437..1675429 (-) 993 WP_000568351.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  D8S83_RS08305 lpdA 1675445..1676866 (-) 1422 WP_001291540.1 dihydrolipoyl dehydrogenase -
  D8S83_RS08310 recN 1677017..1678696 (-) 1680 WP_000942203.1 DNA repair protein RecN Machinery gene
  D8S83_RS08315 argR 1678712..1679164 (-) 453 WP_001124985.1 transcriptional regulator ArgR -
  D8S83_RS08320 - 1679596..1680477 (-) 882 WP_020977292.1 polyprenyl synthetase family protein -
  D8S83_RS08325 - 1680455..1680685 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  D8S83_RS08330 xseA 1680678..1682015 (-) 1338 WP_001286931.1 exodeoxyribonuclease VII large subunit -
  D8S83_RS08335 nusB 1682032..1682421 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  D8S83_RS08340 - 1682481..1682843 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64265.89 Da        Isoelectric Point: 4.7640

>NTDB_id=58178 D8S83_RS08310 WP_000942203.1 1677017..1678696(-) (recN) [Staphylococcus aureus strain GN1]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKKELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=58178 D8S83_RS08310 WP_000942203.1 1677017..1678696(-) (recN) [Staphylococcus aureus strain GN1]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGAAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGTATTCAAAACTCTGAAAAATTAAGTTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTTG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAACCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATATCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.409

100

0.442

Multiple sequence alignment