Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   D8S83_RS06720 Genome accession   NZ_AP018349
Coordinates   1355491..1356642 (+) Length   383 a.a.
NCBI ID   WP_000020353.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1350491..1361642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S83_RS06695 - 1350843..1352129 (+) 1287 WP_000664781.1 pitrilysin family protein -
  D8S83_RS06700 - 1352129..1352833 (+) 705 WP_000646223.1 SDR family NAD(P)-dependent oxidoreductase -
  D8S83_RS06705 - 1352938..1353765 (+) 828 WP_000214892.1 YmfK family protein -
  D8S83_RS06710 - 1353784..1354176 (+) 393 WP_020977202.1 RodZ family helix-turn-helix domain-containing protein -
  D8S83_RS06715 pgsA 1354210..1354788 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D8S83_RS06720 cinA 1355491..1356642 (+) 1152 WP_000020353.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  D8S83_RS06725 recA 1356807..1357850 (+) 1044 WP_072527643.1 recombinase RecA Machinery gene
  D8S83_RS06730 rny 1358204..1359763 (+) 1560 WP_001050913.1 ribonuclease Y -
  D8S83_RS06735 - 1360060..1360275 (-) 216 WP_000026308.1 hypothetical protein -
  D8S83_RS06740 - 1360449..1361246 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43225.55 Da        Isoelectric Point: 6.0928

>NTDB_id=58167 D8S83_RS06720 WP_000020353.1 1355491..1356642(+) (cinA) [Staphylococcus aureus strain GN1]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVPSAIILLEYDGVVYIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=58167 D8S83_RS06720 WP_000020353.1 1355491..1356642(+) (cinA) [Staphylococcus aureus strain GN1]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGAATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGCCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCTATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment