Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   KSP27_RS04160 Genome accession   NZ_CP077603
Coordinates   845363..847108 (+) Length   581 a.a.
NCBI ID   WP_002220971.1    Uniprot ID   A1KU42
Organism   Neisseria meningitidis strain S4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 835393..878733 845363..847108 within 0


Gene organization within MGE regions


Location: 835393..878733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSP27_RS04110 ruvB 835393..836424 (-) 1032 WP_002220958.1 Holliday junction branch migration DNA helicase RuvB -
  KSP27_RS04115 - 836506..836814 (-) 309 WP_002217140.1 hypothetical protein -
  KSP27_RS04120 - 837037..838290 (-) 1254 WP_002220959.1 multifunctional CCA addition/repair protein -
  KSP27_RS04125 - 838362..839990 (-) 1629 WP_002224512.1 ABC-F family ATPase -
  KSP27_RS04130 - 840140..840514 (+) 375 WP_002220962.1 arsenate reductase -
  KSP27_RS04135 - 840569..842107 (+) 1539 WP_002220964.1 SurA N-terminal domain-containing protein -
  KSP27_RS04140 recR 842174..842791 (+) 618 WP_002217147.1 recombination mediator RecR -
  KSP27_RS04145 - 842877..843155 (-) 279 WP_002220967.1 hypothetical protein -
  KSP27_RS04150 - 843360..844607 (+) 1248 WP_002220969.1 lipoprotein-releasing ABC transporter permease subunit -
  KSP27_RS04155 lolD 844600..845295 (+) 696 WP_002220970.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KSP27_RS04160 recD 845363..847108 (+) 1746 WP_002220971.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KSP27_RS04165 - 847136..848239 (-) 1104 WP_002220972.1 class I SAM-dependent methyltransferase -
  KSP27_RS04170 lon 848490..850940 (+) 2451 WP_002220973.1 endopeptidase La -
  KSP27_RS04175 - 851122..851391 (+) 270 WP_002213508.1 HU family DNA-binding protein -
  KSP27_RS04180 - 851450..851884 (-) 435 WP_002220974.1 hypothetical protein -
  KSP27_RS04185 - 851877..853184 (-) 1308 WP_002224514.1 homoserine dehydrogenase -
  KSP27_RS04190 - 853382..853753 (+) 372 WP_002247829.1 MTH938/NDUFAF3 family protein -
  KSP27_RS04195 - 853830..855752 (+) 1923 WP_002220979.1 ATP-binding cassette domain-containing protein -
  KSP27_RS04200 - 855739..856152 (+) 414 WP_002220980.1 DUF4124 domain-containing protein -
  KSP27_RS04205 - 856218..856733 (+) 516 WP_002213515.1 hypothetical protein -
  KSP27_RS11405 - 856766..857182 (+) 417 WP_002220981.1 hypothetical protein -
  KSP27_RS04210 - 857663..858766 (-) 1104 WP_002220982.1 zonular occludens toxin domain-containing protein -
  KSP27_RS04215 - 858777..859067 (-) 291 WP_002220983.1 DUF2523 domain-containing protein -
  KSP27_RS04220 - 859070..860059 (-) 990 WP_002220987.1 virulence factor TspB C-terminal domain-related protein -
  KSP27_RS04225 - 860046..860339 (-) 294 WP_061693569.1 hypothetical protein -
  KSP27_RS04230 - 860408..860710 (-) 303 WP_011113028.1 hypothetical protein -
  KSP27_RS04235 - 860720..860947 (-) 228 WP_002220991.1 major capsid protein -
  KSP27_RS04240 - 861119..861421 (-) 303 WP_002220993.1 hypothetical protein -
  KSP27_RS04245 - 861425..861709 (-) 285 WP_002247828.1 hypothetical protein -
  KSP27_RS04250 - 861702..862874 (-) 1173 WP_033909571.1 replication initiation factor domain-containing protein -
  KSP27_RS04255 - 862941..863168 (-) 228 WP_226879315.1 hypothetical protein -
  KSP27_RS04260 - 863331..863519 (+) 189 WP_002247827.1 hypothetical protein -
  KSP27_RS04265 - 863521..863838 (+) 318 WP_002220997.1 hypothetical protein -
  KSP27_RS04270 - 863920..864249 (+) 330 WP_002221005.1 hypothetical protein -
  KSP27_RS04275 - 864905..866008 (-) 1104 WP_002220982.1 zonular occludens toxin domain-containing protein -
  KSP27_RS04280 - 866019..866309 (-) 291 WP_002220983.1 DUF2523 domain-containing protein -
  KSP27_RS04285 - 866312..867301 (-) 990 WP_002220987.1 virulence factor TspB C-terminal domain-related protein -
  KSP27_RS04290 - 867288..867581 (-) 294 WP_061693569.1 hypothetical protein -
  KSP27_RS04295 - 867650..867952 (-) 303 WP_011113028.1 hypothetical protein -
  KSP27_RS04300 - 867962..868189 (-) 228 WP_002220991.1 major capsid protein -
  KSP27_RS04305 - 868361..868663 (-) 303 WP_002220993.1 hypothetical protein -
  KSP27_RS04310 - 868667..868951 (-) 285 WP_002247828.1 hypothetical protein -
  KSP27_RS04315 - 868944..870116 (-) 1173 WP_033909571.1 replication initiation factor domain-containing protein -
  KSP27_RS04320 - 870183..870410 (-) 228 WP_226879315.1 hypothetical protein -
  KSP27_RS04325 - 870573..870761 (+) 189 WP_002247827.1 hypothetical protein -
  KSP27_RS04330 - 870763..871080 (+) 318 WP_002220997.1 hypothetical protein -
  KSP27_RS04335 - 871162..871491 (+) 330 WP_002221005.1 hypothetical protein -
  KSP27_RS04340 - 872147..873250 (-) 1104 WP_002220982.1 zonular occludens toxin domain-containing protein -
  KSP27_RS04345 - 873261..873551 (-) 291 WP_002220983.1 DUF2523 domain-containing protein -
  KSP27_RS04350 - 873554..874543 (-) 990 WP_002220987.1 virulence factor TspB C-terminal domain-related protein -
  KSP27_RS04355 - 874530..874823 (-) 294 WP_061693569.1 hypothetical protein -
  KSP27_RS04360 - 874892..875194 (-) 303 WP_011113028.1 hypothetical protein -
  KSP27_RS04365 - 875204..875431 (-) 228 WP_002220991.1 major capsid protein -
  KSP27_RS04370 - 875603..875905 (-) 303 WP_002220993.1 hypothetical protein -
  KSP27_RS04375 - 875909..876193 (-) 285 WP_002247828.1 hypothetical protein -
  KSP27_RS04380 - 876186..877358 (-) 1173 WP_033909571.1 replication initiation factor domain-containing protein -
  KSP27_RS04385 - 877425..877652 (-) 228 WP_226879315.1 hypothetical protein -
  KSP27_RS04390 - 877815..878003 (+) 189 WP_002247827.1 hypothetical protein -
  KSP27_RS04395 - 878005..878322 (+) 318 WP_002220997.1 hypothetical protein -
  KSP27_RS04400 - 878404..878733 (+) 330 WP_002221005.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62878.57 Da        Isoelectric Point: 5.9072

>NTDB_id=581578 KSP27_RS04160 WP_002220971.1 845363..847108(+) (recD) [Neisseria meningitidis strain S4]
MERQTDEFAQAAARAAIWFLARYAGSGSEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQPFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFDPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGEAHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNKAYCSHVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=581578 KSP27_RS04160 WP_002220971.1 845363..847108(+) (recD) [Neisseria meningitidis strain S4]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCAGG
CAGCGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGCCTTTTATGGTGATTACCGGCGGACCCGGGACGGGTAAAACGACGACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCGACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAGCGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGTTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGATGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACAAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGGCAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KU42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95.181

100

0.952